Structure of PDB 7nsn Chain A Binding Site BS05

Receptor Information
>7nsn Chain A (length=1371) Species: 220687 (Neobacillus novalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SKTDFFSSFEKSDLQLTWTNTVETDANGKKMSSGIDGNVKRDLILGDITD
KVVQVTASANNPPNEIDSKLIDGDPTTKWLAFEPTANIVLKLAEPVAVVK
YALTSANDAKGRDPKNWTLYGSLDGTNWTAVDTREGEDFKDRFQRNMYDL
KNTTKYLYYKLDITKNAGDSITQLAEISLSDGIEVPAPPPGDMKSLIGKG
PTSSYTAKTNVGWTGLGALNYSGTHLSDGRAYSYNKLYDVDILVTPATEL
SYFIAPEFTDKNHNDYSSTYVSVDLAFSDGTYLHDLKAVDQYGVGLNPKD
QGDSKYLYVNQWNTIKSTIGSVAAGKTIKRILVAYDNPKGPGAFRGSIDD
IKIDGKPVQKAFGSPIDYVNILRGTQSNGSFSRGNNFPAVAIPHGFNFWT
PTTNAGSSWIYQYHESNSVNNLPQIQAFSVSHEPSPWMGDRQTFQVMPSA
STAATPNANRDSRALEFNHANEIAQPHYYSVKFENGIRTEMTPTDHAAMF
KFTFTGATSNLIFDNVNNNGGLTIDAKSGEITGYSDVKSGLSTGATRLFV
YAAFDKPVIKSGKLTGESRNNVTGYVRFDTSKDEDKVVTMKIATSLISVE
QAKKNLEQEIGLNDTFEGLKEKAKTEWNKKLGIIEVEGASEDQLVTLYSN
LYRLFLYPNSAFENVGTTTDPVYKYASPYSAATGQDTATTTGAKIVDGKT
YVNNGFWDTYRTAWPAYSLLTPTFAGELIDGFVQQYRDGGWIARWSSPGF
ANLMPGTSSDVAFADAYLKGVTNFDVQSFYQSAIRNAEAVSPNAGTGRKG
LTTSIFDGYTNTSTGEGLAWAMDGYINDFGIANLAKALKEKGDKSDPYYA
NYAADYQYFLNRAQNYVHMFNPSIEFFNGRTANGAWRSTPDNFNPAVWGS
DYTETNGWNMAFHVPQDGQGLANLYGGKEGLATKLDQFFSTSETGLFPGS
YGGTIHEMREARDVRMGMYGHSNQPSHHIAYMYDYAGQPWKTQEKVREAL
NRLYIGSAIGQGYSGDEDNGEMSAWYILSAMGFYPLKMGTPEYAIGAPLF
KKATIHLENGKSIVINAPNNSKENKYVQSMKVNGKAYAKTSILHADIANG
AVIDFEMGSKPSKWGSGDQDILQSITPGSTDGTSLSPLPLRDVTDRLIAA
EKGAVTVSDEGNGQLLFDNTSNTQLSMKSKTPSIVYQFKEGKQNVKMYTL
TSSKASQNEDPKSWVLKGSNDGKSWSVLDQRKNETFQWRQYTRAFTIQHP
GKYSQYKLEITENAGAEVTTLAELELLGYDDVTNSYQAVYELMEQFKQSK
DLTGPMAVQLNNSLTTSLDHFKKDHKDQAIKHLEDFLKHLNNKGLQDRIS
SKAKGVLSADANQLIVLLARD
Ligand information
Ligand IDMVL
InChIInChI=1S/C8H12N2O4/c11-3-4-5(12)6(13)7(14)8-9-1-2-10(4)8/h1-2,4-7,11-14H,3H2/t4-,5-,6+,7+/m1/s1
InChIKeyRZRDQZQPTISYKY-JWXFUTCRSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6c1cn2c(n1)C(C(C(C2CO)O)O)O
OpenEye OEToolkits 1.7.6c1cn2c(n1)[C@H]([C@H]([C@@H]([C@H]2CO)O)O)O
CACTVS 3.385OC[C@@H]1[C@@H](O)[C@H](O)[C@H](O)c2nccn12
ACDLabs 12.01n1ccn2c1C(O)C(O)C(O)C2CO
CACTVS 3.385OC[CH]1[CH](O)[CH](O)[CH](O)c2nccn12
FormulaC8 H12 N2 O4
Name(5R,6R,7S,8R)-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL;
Mannoimidazole
ChEMBLCHEMBL1213397
DrugBank
ZINCZINC000003821680
PDB chain7nsn Chain A Residue 1505 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7nsn Structural and functional characterization of multi-domain GH92 alpha-1,2-mannosidase from Neobacillus novalis
Resolution2.29 Å
Binding residue
(original residue number in PDB)
S475 W477 W747 D748 W785 M794 E944 D1058
Binding residue
(residue number reindexed from 1)
S435 W437 W707 D708 W745 M754 E904 D1018
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.-
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding
Biological Process
GO:0005975 carbohydrate metabolic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:7nsn, PDBe:7nsn, PDBj:7nsn
PDBsum7nsn
PubMed37071393
UniProtA0A7R9KAR8

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