Structure of PDB 6puq Chain A Binding Site BS05

Receptor Information
>6puq Chain A (length=171) Species: 402676 (Schizosaccharomyces japonicus yFS275) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RKLTDISACSINIFYSTLGGSTQKFAEHVADRIRSSLQTELVEILNLDYI
DLDEYFSKGNSNTVYLVLLPSYAIESSIDYFLSALQTTIDDFRIVARPLE
KLRGFAVLGFGDFEQYAGDLFCYQAIAADQRLAKLGAQRIAPLGVVNVKL
EKAQVYEAMEAWTDLFLQYAK
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6puq Chain A Residue 305 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6puq Biochemical and structural characterization of the flavodoxin-like domain of the Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN.
Resolution1.56 Å
Binding residue
(original residue number in PDB)		Y149 I151 S153 D156 Q201
Binding residue
(residue number reindexed from 1)		Y72 I74 S76 D79 Q124
Annotation score1
Enzymatic activity
Enzyme Commision number 4.1.3.44: tRNA 4-demethylwyosine synthase (AdoMet-dependent).
Gene Ontology
Molecular Function
GO:0009055 electron transfer activity
GO:0010181 FMN binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0008033 tRNA processing

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Molecular Function
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Biological Process
External links
PDB RCSB:6puq, PDBe:6puq, PDBj:6puq
PDBsum6puq
PubMed35693892
UniProtB6K6D6

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