Structure of PDB 6dlh Chain A Binding Site BS05

Receptor Information
>6dlh Chain A (length=704) Species: 264023 (Mariniflexile fucanivorans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QVPDPNQGLRAEWMRGALGMLWLPERTFNGNIEGIRIDDFLTQIKDIRTV
DYVQLPLTSPNIFSPTHVAPHPIIESLWQGDTDANGDPINLVAPRESVDD
PLLSWLKALRAAGLRTEIYVNSYNLLARIPEDTQADYPDVSARWMEWCDT
NTEAQAFINSQTYHEGNGRRKYMFCYAEFILKEYAQRYGDLIDAWCFDSA
DNVMEDECGDDPASEDVNDQRIYQAFADACHAGNPNAAIAFNNSVGDREG
NPFTSATLFDDYTFGHPFGGAGNMVVPEALYTYNHDLVVFMQTNNGYAFR
DDTRTWNDNVVAHFFPKQSTTSWNAGNTPCLTDEQFVEWTSTGIVNGGGI
TWGTPLVRTNLENAPVLTLQPYALNQFELTDTYLKEFQSPGKPNWSRQYT
ILPAIYPGQPYSHNLVEGVDFWDPEGVGITGLTASGTLPAWLTISQTATG
TWTLSGTPPVSEASNYTFELMAQDSDGVTNREVKLEVISHPAGFTNPGDG
TPVWFSNPMVLAKATALKDYGSLLKLGVDFYDFEGDVLTITKTSGPDWLV
LTQNSDDTWRLSGMPTAADAGENSFTFNVSDGILSSDTEIKITVDHVAGF
TNLGNGAPVWSSPILNLTDGKGSFAYNYTLQLGTDYYDFEGDALTITKTS
GPDWLTIQQTDANSWKLSGTPINSDAGENSFTFNLSDDTNSTTAEILINV
IATI
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain6dlh Chain A Residue 808 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6dlh Endo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107) display structural and mechanistic similarities to alpha-l-fucosidases from GH29.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		G419 D451 E453 D502
Binding residue
(residue number reindexed from 1)		G391 D423 E425 D474
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Cellular Component
GO:0016020 membrane

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Molecular Function
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Cellular Component
External links
PDB RCSB:6dlh, PDBe:6dlh, PDBj:6dlh
PDBsum6dlh
PubMed30282808
UniProtQ08I46

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