Structure of PDB 5yv5 Chain A Binding Site BS05

Receptor Information
>5yv5 Chain A (length=517) Species: 1185654 (Pyrococcus furiosus COM1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SHLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQ
LIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPK
AVKGKVIELLKKADETGKLEEVVKALELENVLDREIQHLSGGELQRVAIA
AALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAV
LDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFRPYE
IKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGP
NGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSK
IDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDA
DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD
RLMVFEGEPGKYGRALPPMGMREGMNRFLASIGITFRRDPDTGRPRANKE
GSVKDREQKEKGEYYYI
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5yv5 Chain A Residue 604 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5yv5 The ribosomal stalk protein is crucial for the action of the conserved ATPase ABCE1
Resolution2.1 Å
Binding residue
(original residue number in PDB)		T378 Q406
Binding residue
(residue number reindexed from 1)		T306 Q334
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity

View graph for
Molecular Function
External links
PDB RCSB:5yv5, PDBe:5yv5, PDBj:5yv5
PDBsum5yv5
PubMed30010948
UniProtI6V0C7

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