Structure of PDB 5yl7 Chain A Binding Site BS05

Receptor Information

>5yl7 Chain A (length=339) Species: 394751 (Pseudoalteromonas arctica) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

STPNDPRFDDQWHYYEQAGGLNLPTAWDTATGSGVVVAVLDTGYRPHADL
NANILPGYDMISNLSVANDGGGRDSDARDPGDAVAANECGTNGAQNSSWH
GTHVAGTVAAVTNNGEGVAGVAYNAKVVPVRVLGKCGGLTSDIADGIIWA
SGGSVSGIPANSNPADVINMSLGGSGSCSSTTQNAINTARSNGTVVVIAA
GNDNDNSANYNPGNCNGVVNVASVGRNGGRAYYSNYGSNIDVAAPGGAQS
FANDSEGVLSTYNSGSSTPSSDSYGYSQGTSMAAPHVAGVAALIKQAKPD
ATPDEIESILKSTTRSFPATCTSCGTGIVDAAAAVAAAS

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

5yl7 Chain A Residue 804 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	5yl7 Crystal structure of a cold-active protease (Pro21717) from the psychrophilic bacterium, Pseudoalteromonas arctica PAMC 21717, at 1.4 angstrom resolution: Structural adaptations to cold and functional analysis of a laundry detergent enzyme
Resolution	1.4 Å
Binding residue (original residue number in PDB)	V362 D385 E451
Binding residue (residue number reindexed from 1)	V218 D241 E307
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0004252	serine-type endopeptidase activity
GO:0008236	serine-type peptidase activity

	Biological Process
GO:0006508	proteolysis

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:5yl7, PDBe:5yl7, PDBj:5yl7
PDBsum	5yl7
PubMed	29466378
UniProt	A0A290S6P3

[Back to BioLiP]