Structure of PDB 5szm Chain A Binding Site BS05

Receptor Information

>5szm Chain A (length=416) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

QIRYSVPEETDKGTVVGNISKDLGLEPRELAERGVRIVSRGRSQLFSLNP
RGGSLVTAGRIDREELCAQSTPCLVNINILVEEKGKLFGVEIEITDINDN
NPKFHVGDLEVKINEIAAPGARYPLPEAVDPDVGINSLQSYQLSPNRHFS
LHLQTGDDGTINPELVLERTLDREEEPTHHLVLTASDGGEPRRSSTALIQ
ITVLDTNDNAPVFDQPVYRVKVLENVAPGTLLLTVRASDPDEGVNGKVTY
KFRKINEKQSLLFHLHENTGEMTVAKNLDYEECSLYEMEIQAEDVGALLG
RSKVIIMVEDVNDNRPEVTITSLFNPVLENSLPGTVIAFLNVHDQDSGKN
GQVVCYTHDNLPFKLEKSIDNYYRLVTWKYLDREKVSTYNITVIASDLGA
PPLSTETYIALTVADT

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

5szm Chain A Residue 509 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5szm gamma-Protocadherin structural diversity and functional implications.
Resolution	3.6 Å
Binding residue (original residue number in PDB)	N207 N209 D239 D241 N245 D294
Binding residue (residue number reindexed from 1)	N207 N209 D239 D241 N245 D294
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0005509	calcium ion binding

	Biological Process
GO:0007155	cell adhesion
GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules

	Cellular Component
GO:0005886	plasma membrane
GO:0016020	membrane

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Cellular Component

External links

PDB	RCSB:5szm, PDBe:5szm, PDBj:5szm
PDBsum	5szm
PubMed	27782885
UniProt	Q91XY0

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