Structure of PDB 5m11 Chain A Binding Site BS05

Receptor Information
>5m11 Chain A (length=748) Species: 837 (Porphyromonas gingivalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GIWNTLLAIHKTEKAVETPKKVFAVANGVLYSVGKEAPHEAKIFDRISGL
SDTSVSSIAYSEQLKSLVIYYASGNIDILDEAGRVTNVPALKDNIDLIDK
TLNRLLIVGNRAYLAGGFGLSVLDVAEARIPATYAKGTKVTDVAKLDNDR
LLMLKEGQLFIGKETDNLQDPAAWTALSLNLPMGSVTGLGIVGEDICFLL
ADGRVYVAANQSFEPELLLSSSADSRLYVTDRGLFICAENRIYFIEKGRK
TTQFPIADVLGVGAMNESNTAYIALGEEGLASLLLAEGSTAEAMPVAFDG
PGDNDFYEMRFSHGRLYAASGLWGTNLMGHAGMVKLYDGNRWTNFDKKTV
QEQLGGGFSFNDAIDIAVSNGDPDHFFVGTWGNGLFEFKDGKAIARYSGN
ETAIAECNPGDARVKAIAFDNKGNLWGTLGAVGKNIFMYDPQSSTWHSFS
YPDVANLASFGNMIILPNGDKWVNILHRSGGSTRKGVLIFNDRGTPETTS
DDSHLYVEQFVNRLGAAIGHKTIYAMAVDHNGSVWMGSDIGIFGVYNAAG
VLSSTSTPIAVRPVGGEEPNLYYVLDKVTVTDIVVDKLNHKWVATQGTGL
YLLSEDCSKILAQFTVENSPLLSNNILSLALNDDNGLLYIGTADGLMTFQ
TGTGSGSASELDGVYVYPNPLRPEYPDGVTIAGLQAGCSVKITDTTGRLL
YQTESVTTEVKWNARGADGNRVASGVYAVAVYDPVSKKSKLIRFAVIR
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5m11 Chain A Residue 808 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5m11 Structural and functional probing of PorZ, an essential bacterial surface component of the type-IX secretion system of human oral-microbiomic Porphyromonas gingivalis.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		D152 E155
Binding residue
(residue number reindexed from 1)		D124 E127
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5m11, PDBe:5m11, PDBj:5m11
PDBsum5m11
PubMed27883039
UniProtQ9S3Q8

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