Structure of PDB 3rja Chain A Binding Site BS05

Receptor Information
>3rja Chain A (length=473) Species: 5520 (Microdochium nivale) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAIEACLSAAGVPIDIPGTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQ
SAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDK
TGIAHVEPGARLGHLATVLNDKYGRAISHGTCPGVGISGHFAHGGFGFSS
HMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAVW
KLATFPAPKVLTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIG
DYGAGNPGIEGLYYGTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVL
SYSNFDHVDFITPQPVENFYAKSLTLKSIKGDAVKNFVDYYFDVSNKVKD
RFWFYQLDVHGGKNSQVTKVTNAETAYPHRDKLWLIQFYDRYDNNQTYPE
TSFKFLDGWVNSVTKALPKSDWGMYINYADPRMDRDYATKVYYGENLARL
QKLKAKFDPTDRFYYPQAVRPVK
Ligand information
Ligand IDABL
InChIInChI=1S/C12H21NO10/c14-1-3-10(7(18)8(19)11(21)13-3)23-12-9(20)6(17)5(16)4(2-15)22-12/h3-10,12,14-20H,1-2H2,(H,13,21)/t3-,4-,5-,6+,7-,8-,9-,10-,12+/m1/s1
InChIKeyWXSNJJDPPISYEF-ZNLUKOTNSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C2NC(C(OC1OC(C(O)C(O)C1O)CO)C(O)C2O)CO
OpenEye OEToolkits 1.7.2C([C@@H]1[C@H]([C@@H]([C@H](C(=O)N1)O)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O
CACTVS 3.370OC[C@H]1NC(=O)[C@H](O)[C@@H](O)[C@@H]1O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O
OpenEye OEToolkits 1.7.2C(C1C(C(C(C(=O)N1)O)O)OC2C(C(C(C(O2)CO)O)O)O)O
CACTVS 3.370OC[CH]1NC(=O)[CH](O)[CH](O)[CH]1O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O
FormulaC12 H21 N O10
Name(2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl beta-D-glucopyranoside;
5-amino-5-deoxy-cellobiono-1,5-lactam;
(2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl beta-D-glucoside;
(2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl D-glucoside;
(2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl glucoside
ChEMBL
DrugBankDB04096
ZINCZINC000015787448
PDB chain3rja Chain A Residue 604 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3rja Crystallization of carbohydrate oxidase from Microdochium nivale.
Resolution2.1 Å
Binding residue
(original residue number in PDB)
Y72 C132 Y252 N304 Q356 Q387 Y389 R391 Y428
Binding residue
(residue number reindexed from 1)
Y72 C132 Y252 N304 Q356 Q387 Y389 R391 Y428
Annotation score2
Enzymatic activity
Enzyme Commision number 1.1.3.-
1.1.3.5: hexose oxidase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016491 oxidoreductase activity
GO:0046562 glucose oxidase activity
GO:0046872 metal ion binding
GO:0047979 hexose oxidase activity
GO:0050660 flavin adenine dinucleotide binding
GO:0071949 FAD binding
Cellular Component
GO:0005576 extracellular region

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Molecular Function

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Cellular Component
External links
PDB RCSB:3rja, PDBe:3rja, PDBj:3rja
PDBsum3rja
PubMed
UniProtI1SB12|MNCO_MICNN Carbohydrate oxidase (Gene Name=MnCO)

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