Structure of PDB 3jby Chain A Binding Site BS05

Receptor Information
>3jby Chain A (length=550) Species: 7955 (Danio rerio) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRNAEKEL
LPGFHQFEWQPALKNVSTSWDVGIIDGLSGWTVSVDDVPADTISRRFRYD
VALVSALKDLEEDIMEGLRERALDDSMCTSGFTVVVKESCDGMGDVSEKH
GSGPAVPEKAVRFSFTIMSISIRLEGEDDGITIFQEQKPNSELSCRPLCL
MFVDESDHETLTAILGPVVAERKAMMESRLIISVGGLLRSFRFFFRGTGY
DEKMVREMEGLEASGSTYICTLCDSTRAEASQNMVLHSITRSHDENLERY
EIWRKNPFSESADELRDRVKGVSAKPFMETQPTLDALHCDIGNATEFYKI
FQDEIGEVYQKPNPSREERRRWRSTLDKQLRKKMKLKPVMRMNGNYARRL
MTREAVEAVCELVPSEERREALLKLMDLYLQMKPVWRSTCPSRDCPDQLC
QYSYNSQQFADLLSSMFKYRYDGKITNYLHKTLAHVPEIVERDGSIGAWA
SEGNESGNKLFRRFRKMNARQSKTFELEDILKHHWLYTSKYLQKFMEAHK
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3jby Molecular Mechanism of V(D)J Recombination from Synaptic RAG1-RAG2 Complex Structures.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		D730 E731 K732 S743 R756 R870 T955 N956
Binding residue
(residue number reindexed from 1)		D251 E252 K253 S264 R277 R391 T476 N477
Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
3.1.-.-
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0043565 sequence-specific DNA binding
GO:0046872 metal ion binding
GO:0061630 ubiquitin protein ligase activity
Biological Process
GO:0033151 V(D)J recombination

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3jby, PDBe:3jby, PDBj:3jby
PDBsum3jby
PubMed26548953
UniProtO13033|RAG1_DANRE V(D)J recombination-activating protein 1 (Gene Name=rag1)

[Back to BioLiP]