Structure of PDB 2yhg Chain A Binding Site BS05

Receptor Information
>2yhg Chain A (length=411) Species: 203122 (Saccharophagus degradans 2-40) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GRYRVIHTTDMGADPDDEQSLVRQLVMANEYDLEGIITTTGCWKKSTSNT
AYVDRILNAYSQAYPNLSKHAEGFPTPAYLDSINVMGQRGYGMGDVGSGK
DSAGSNLIIAAVDKDDPRPVWATCWGGCNTIAQAVWKVQNTRSQAQLDAF
ISKLRVYDILGQDNAGTWLAKNFPNLIYIRARSVYSWQPSDSYLDNHIQS
HGALGAVYPNRRYATEGDTPAFLHMANPGLNDPSVVSMGGWGGRFPSKQA
GVRGMSCMSGEDAVYDTYYMYTENGESIKRWSTAIHNDFQARMDWAIESN
YSAANHHPVPVVNNDANEAVMYLNASAGSTVSLDASGSSDPDGDSLNYSW
SHYGEADSYSGSVSISNSSSASANVQIPSNAGGKDIHILLTLRDNGSPNL
YAYRRVVINVQ
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain2yhg Chain A Residue 1939 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2yhg Ab initio phasing of a nucleoside hydrolase-related hypothetical protein from Saccharophagus degradans that is associated with carbohydrate metabolism.
Resolution1.08 Å
Binding residue
(original residue number in PDB)		G761 G762 G765 S799
Binding residue
(residue number reindexed from 1)		G239 G240 G243 S277
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds

View graph for
Molecular Function
External links
PDB RCSB:2yhg, PDBe:2yhg, PDBj:2yhg
PDBsum2yhg
PubMed21905122
UniProtQ21PD3

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