Structure of PDB 6rhz Chain 3 Binding Site BS05
Receptor Information
>6rhz Chain 3 (length=210) Species:
3046
(Dunaliella salina) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
YLDGTLPGDYGFDPLGLLDPTVSNGQGAGGFVNPRWLQYSEVIHARWAML
GAAGCIAPEILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWADPFTLFFI
EVVAIQFAELKRLQDYKNPGSQSRQYFLGLEGLFKGSDNPAYPGGPFFNF
ANFGKTEAEMKKLKLNEIKNGRLAMLAMFGYGAQAVITGDGPFDNLLAHL
ADPTGANLIT
Ligand information
Ligand ID
CHL
InChI
InChI=1S/C55H71N4O6.Mg/c1-12-38-35(8)42-27-43-36(9)40(23-24-48(61)65-26-25-34(7)22-16-21-33(6)20-15-19-32(5)18-14-17-31(3)4)52(58-43)50-51(55(63)64-11)54(62)49-37(10)44(59-53(49)50)28-46-39(13-2)41(30-60)47(57-46)29-45(38)56-42;/h12,25,27-33,36,40,51H,1,13-24,26H2,2-11H3,(H-,56,57,58,59,60,62);/q-1;+4/p-1/b34-25+;/t32-,33-,36?,40?,51-;/m1./s1
InChIKey
MWVCRINOIIOUAU-UYSPMESUSA-M
SMILES
Software
SMILES
OpenEye OEToolkits 2.0.7
CCC1=C(c2cc3c(c(c4n3[Mg]56[n+]2c1cc7n5c8c(c9[n+]6c(c4)C(C9CCC(=O)OCC=C(C)CCCC(C)CCCC(C)CCCC(C)C)C)C(C(=O)c8c7C)C(=O)OC)C)C=C)C=O
OpenEye OEToolkits 2.0.7
CCC1=C(c2cc3c(c(c4n3[Mg]56[n+]2c1cc7n5c8c(c9[n+]6c(c4)C(C9CCC(=O)OC/C=C(\C)/CCC[C@H](C)CCC[C@H](C)CCCC(C)C)C)[C@H](C(=O)c8c7C)C(=O)OC)C)C=C)C=O
CACTVS 3.385
CCC1=C(C=O)C2=Cc3n4c(C=C5[CH](C)[CH](CCC(=O)OCC=C(C)CCC[CH](C)CCC[CH](C)CCCC(C)C)C6=[N+]5[Mg]47[N]8C(=CC1=[N+]27)C(=C9C(=O)[CH](C(=O)OC)C6=C89)C)c(C)c3C=C
CACTVS 3.385
CCC1=C(C=O)C2=Cc3n4c(C=C5[C@H](C)[C@H](CCC(=O)OC\C=C(/C)CCC[C@H](C)CCC[C@H](C)CCCC(C)C)C6=[N@+]5[Mg]47[N@@]8C(=CC1=[N@+]27)C(=C9C(=O)[C@H](C(=O)OC)C6=C89)C)c(C)c3C=C
Formula
C55 H70 Mg N4 O6
Name
CHLOROPHYLL B
ChEMBL
DrugBank
ZINC
PDB chain
6rhz Chain 3 Residue 604 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
6rhz
Structure of a minimal photosystem I from the green alga Dunaliella salina.
Resolution
3.2 Å
Binding residue
(original residue number in PDB)
L74 G80 D81 Y82 F84 L89 E113 H116 R244 M247
Binding residue
(residue number reindexed from 1)
L2 G8 D9 Y10 F12 L17 E41 H44 R172 M175
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Biological Process
GO:0009765
photosynthesis, light harvesting
Cellular Component
GO:0016020
membrane
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:6rhz
,
PDBe:6rhz
,
PDBj:6rhz
PDBsum
6rhz
PubMed
32123351
UniProt
C1K004
[
Back to BioLiP
]