Structure of PDB 7y7a Chain zQ Binding Site BS04

Receptor Information
>7y7a Chain zQ (length=462) Species: 35688 (Porphyridium purpureum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LSSGSSAAVPFSTAVRFESPSGGLDRYSRVDPAAPGPNVITRFLFKDRPV
RRSDPSLSEVDREATMRTVYRNVMGNAYVMEEERAELATLESQFLVGAIS
TRDFVRGVAKSATYKKRFFESVSQFRFIELNFKHFMGRAPLDMAEMSKHY
EIFAAGGYDAEVDSYFDSEEYLDVFGLDTVPYMRFRGTYAPNSTFNLQCR
LQGGWARSDKKLPMMSMLPLNNKAAIMPHQIVDGLPVIPNSEHPSQKYNV
PKVSREKLQRELLIAQGKANALQIELDAAYTSLASSRAFLAPFAAMAADM
DIRPLYGKNPQVFAGQFLGVGAGQWGKTGADTVRGRSRRVAADIGVKEFQ
LERVKQLVVDLQRALALEDAEADAPATSLLQAYQAKVYVKPPVIAKKKGP
EPVNEDEITIGQGDKKIKVTVLRNLGDRTEKLREKPEKEEEEGPRTFKDL
YETAKPMKGFPG
Ligand information
Ligand IDPEB
InChIInChI=1S/C33H40N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h8,14-15,19-20,26,34H,2,7,9-13H2,1,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b27-14-,29-15-/t19-,20-,26-/m1/s1
InChIKeyNKCBCVIFPXGHAV-WAVSMFBNSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CCC1C(C(=O)NC1=CC2=NC(=Cc3c(c(c([nH]3)CC4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)C(=C2C)CCC(=O)O)C
OpenEye OEToolkits 1.5.0CC[C@@H]\1[C@H](C(=O)N/C1=C\C2=N/C(=C\c3c(c(c([nH]3)C[C@@H]4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)/C(=C2C)CCC(=O)O)C
CACTVS 3.341CC[C@@H]1[C@@H](C)C(=O)N\C1=C/C2=N\C(=C/c3[nH]c(C[C@H]4NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)C(=C2C)CCC(O)=O
CACTVS 3.341CC[CH]1[CH](C)C(=O)NC1=CC2=NC(=Cc3[nH]c(C[CH]4NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)C(=C2C)CCC(O)=O
FormulaC33 H40 N4 O6
NamePHYCOERYTHROBILIN
ChEMBL
DrugBank
ZINCZINC000058633585
PDB chain7y7a Chain LQ Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7y7a In situ structure of the red algal phycobilisome-PSII-PSI-LHC megacomplex.
Resolution4.3 Å
Binding residue
(original residue number in PDB)		T68 R213 G214 T215 Y216
Binding residue
(residue number reindexed from 1)		T41 R186 G187 T188 Y189
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009507 chloroplast
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane
GO:0030089 phycobilisome

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7y7a, PDBe:7y7a, PDBj:7y7a
PDBsum7y7a
PubMed36922595
UniProtA0A5J4YI31

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