Structure of PDB 7y4l Chain z8 Binding Site BS04

Receptor Information
>7y4l Chain z8 (length=463) Species: 35688 (Porphyridium purpureum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LSSGSSAAVPFSTAVRFESPSGGLDRYSRVDPAAPGPNVITRFLFKDRPV
RRSDPSLSEVDREATMRTVYRNVMGNAYVMEEERAELATLESQFLVGAIS
TRDFVRGVAKSATYKKRFFESVSQFRFIELNFKHFMGRAPLDMAEMSKHY
EIFAAGGYDAEVDSYFDSEEYLDVFGLDTVPYMRFRGTYAPNSTFNLQCR
LQGGWARSDKKLPMMSMLPLNNKAAIMPHQIVDGLPVIPNSEHPSQKYNV
PKVSREKLQRELLIAQGKANALQIELDAAYTSLASSRAFLAPFAAMAADM
DIRPLYGKNPQVFAGQFLGVGAGQWGKTGADTVRGRSRRVAADIGVKEFQ
LERVKQLVVDLQRALALEDAEADAPATSLLQAYQAKVYVKPPVIAKKKGP
EPVNEDEITIGQGDKKIKVTVLRNLGDRTEKLREKPEKEEEEGPRTFKDL
YETAKPMKGFPGD
Ligand information
Ligand IDPEB
InChIInChI=1S/C33H40N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h8,14-15,19-20,26,34H,2,7,9-13H2,1,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b27-14-,29-15-/t19-,20-,26-/m1/s1
InChIKeyNKCBCVIFPXGHAV-WAVSMFBNSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CCC1C(C(=O)NC1=CC2=NC(=Cc3c(c(c([nH]3)CC4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)C(=C2C)CCC(=O)O)C
OpenEye OEToolkits 1.5.0CC[C@@H]\1[C@H](C(=O)N/C1=C\C2=N/C(=C\c3c(c(c([nH]3)C[C@@H]4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)/C(=C2C)CCC(=O)O)C
CACTVS 3.341CC[C@@H]1[C@@H](C)C(=O)N\C1=C/C2=N\C(=C/c3[nH]c(C[C@H]4NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)C(=C2C)CCC(O)=O
CACTVS 3.341CC[CH]1[CH](C)C(=O)NC1=CC2=NC(=Cc3[nH]c(C[CH]4NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)C(=C2C)CCC(O)=O
FormulaC33 H40 N4 O6
NamePHYCOERYTHROBILIN
ChEMBL
DrugBank
ZINCZINC000058633585
PDB chain7y4l Chain L8 Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7y4l In situ structure of the red algal phycobilisome-PSII-PSI-LHC megacomplex.
Resolution3.3 Å
Binding residue
(original residue number in PDB)		T68 R213 T215 Y216 N219
Binding residue
(residue number reindexed from 1)		T41 R186 T188 Y189 N192
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009507 chloroplast
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane
GO:0030089 phycobilisome

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7y4l, PDBe:7y4l, PDBj:7y4l
PDBsum7y4l
PubMed36922595
UniProtA0A5J4YI31

[Back to BioLiP]