Structure of PDB 3np2 Chain X Binding Site BS04

Receptor Information
>3np2 Chain X (length=172) Species: 9796 (Equus caballus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALCGVAHFF
RELAEEKREGAERLLKMQNQRGGRALFQDLQKPSQDEWGTTLDAMKAAIV
LEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNI
QRLVGSQAGLGEYLFERLTLKH
Ligand information
Ligand IDPD
InChIInChI=1S/Pd/q+2
InChIKeyMUJIDPITZJWBSW-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Pd++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Pd+2]
FormulaPd
NamePALLADIUM ION
ChEMBL
DrugBank
ZINC
PDB chain3np2 Chain X Residue 179 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3np2 Definite coordination arrangement of organometallic palladium complexes accumulated on the designed interior surface of apo-ferritin.
Resolution1.86 Å
Binding residue
(original residue number in PDB)
C45 H173
Binding residue
(residue number reindexed from 1)
C44 H172
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0008198 ferrous iron binding
GO:0008199 ferric iron binding
GO:0046872 metal ion binding
Biological Process
GO:0006826 iron ion transport
GO:0006879 intracellular iron ion homeostasis
GO:0006880 intracellular sequestering of iron ion
Cellular Component
GO:0005737 cytoplasm
GO:0005764 lysosome
GO:0005776 autophagosome
GO:0031410 cytoplasmic vesicle
GO:0044754 autolysosome
GO:0070288 ferritin complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:3np2, PDBe:3np2, PDBj:3np2
PDBsum3np2
PubMed20730233
UniProtP02791|FRIL_HORSE Ferritin light chain (Gene Name=FTL)

[Back to BioLiP]