Structure of PDB 9gd3 Chain W Binding Site BS04

Receptor Information
>9gd3 Chain W (length=864) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PTRFSNRQNKTVNYNIDYSDDDLLDFHGIDIVINHRLKDLNNCKENYEFL
IKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTA
EDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRL
NYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKL
SVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAF
ISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRD
TIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDE
AHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRF
TIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERIL
RVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYL
FDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRV
LIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSND
FVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHV
MVYRLVSKDTVEEEVLERARKKMILEYAIIDMDSIGESEVRALYKAILKF
GNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKDCVHEEEKNRKVLF
NFKGVKSLNAESLLSRVEDLKYLKNLINSNYKDDPLKFSLGNNTPKPVQN
WSSNWTKEEDEKLLIGVFKYGYGSWTQIRDDPFLGITDKIFLKKVPGAIH
LGRRVDYLLSFLRG
Ligand information
Ligand IDBEF
InChIInChI=1S/Be.3FH/h;3*1H/q+2;;;/p-3
InChIKeyOGIAHMCCNXDTIE-UHFFFAOYSA-K
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0[Be-](F)(F)F
ACDLabs 10.04
CACTVS 3.341		F[Be-](F)F
FormulaBe F3
NameBERYLLIUM TRIFLUORIDE ION
ChEMBL
DrugBank
ZINC
PDB chain9gd3 Chain W Residue 1502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9gd3 Resolution of transcription-induced hexasome-nucleosome complexes by Chd1 and FACT.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		M403 G404 K407 R804 R807
Binding residue
(residue number reindexed from 1)		M239 G240 K243 R640 R643
Annotation score1
External links
PDB RCSB:9gd3, PDBe:9gd3, PDBj:9gd3
PDBsum9gd3
PubMed39270644
UniProtP32657|CHD1_YEAST Chromo domain-containing protein 1 (Gene Name=CHD1)

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