Structure of PDB 5o9g Chain W Binding Site BS04

Receptor Information
>5o9g Chain W (length=855) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DFHGIDIVINHRLKTSKTVPDLNNCKENYEFLIKWTDESHLHNTWETYES
IGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFE
EFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAP
EQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLT
GINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVV
PLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPKTMKFNV
LLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANR
MLITGTPLQNNIKELAALVNFLMPGRFNQDEEQEEYIHDLHRRIQPFILR
RLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSIMNELKKASNH
PYLFDNAEERVLQKFMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVL
IFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDF
VFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVM
VYRLVSKDTVEEEVLERARKKMILEYDMDSIGESEVRALYKAILKFGNLK
EILDELIADGTLPVKSFEKYGETYDEMMEAAKDCVHEEEKNRKEILEKLE
KHATAYRAKLKSGEIKAENQPKDNPLTRLSLKKREKKAVLFNFKGVKSLN
AESLLSRVEDLKYLKNLINSNYKDDPLKFSLGNNTPKPVQNWSSNWTKEE
DEKLLIGVFKYGYGSWTQIRDDPFLGITDKIFLKKVPGAIHLGRRVDYLL
SFLRG
Ligand information
Ligand IDBEF
InChIInChI=1S/Be.3FH/h;3*1H/q+2;;;/p-3
InChIKeyOGIAHMCCNXDTIE-UHFFFAOYSA-K
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0[Be-](F)(F)F
ACDLabs 10.04
CACTVS 3.341		F[Be-](F)F
FormulaBe F3
NameBERYLLIUM TRIFLUORIDE ION
ChEMBL
DrugBank
ZINC
PDB chain5o9g Chain W Residue 1502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5o9g Nucleosome-Chd1 structure and implications for chromatin remodelling.
Resolution4.8 Å
Binding residue
(original residue number in PDB)		M403 E514 R804 R807
Binding residue
(residue number reindexed from 1)		M221 E327 R589 R592
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.4.-
Gene Ontology
Molecular Function
GO:0000182 rDNA binding
GO:0000976 transcription cis-regulatory region binding
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0004386 helicase activity
GO:0005524 ATP binding
GO:0008094 ATP-dependent activity, acting on DNA
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
GO:0031490 chromatin DNA binding
GO:0035064 methylated histone binding
GO:0042393 histone binding
GO:0097159 organic cyclic compound binding
GO:0140658 ATP-dependent chromatin remodeler activity
Biological Process
GO:0000724 double-strand break repair via homologous recombination
GO:0000729 DNA double-strand break processing
GO:0001178 regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0006325 chromatin organization
GO:0006338 chromatin remodeling
GO:0006357 regulation of transcription by RNA polymerase II
GO:0006363 termination of RNA polymerase I transcription
GO:0006368 transcription elongation by RNA polymerase II
GO:0006369 termination of RNA polymerase II transcription
GO:0007062 sister chromatid cohesion
GO:0009889 regulation of biosynthetic process
GO:0034728 nucleosome organization
GO:1902275 regulation of chromatin organization
GO:2000104 negative regulation of DNA-templated DNA replication
Cellular Component
GO:0000123 histone acetyltransferase complex
GO:0000124 SAGA complex
GO:0000785 chromatin
GO:0005634 nucleus
GO:0005739 mitochondrion
GO:0030874 nucleolar chromatin
GO:0035861 site of double-strand break
GO:0046695 SLIK (SAGA-like) complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5o9g, PDBe:5o9g, PDBj:5o9g
PDBsum5o9g
PubMed29019976
UniProtP32657|CHD1_YEAST Chromo domain-containing protein 1 (Gene Name=CHD1)

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