Structure of PDB 8vs9 Chain SMPB Binding Site BS04

Receptor Information
>8vs9 Chain SMPB (length=150) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD
GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYT
VVALSLYWKNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR
Ligand information
>8vs9 Chain TMRN (length=363) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<.............<<<<<<<<.......<...<<<..<<<<..
....<<<<<..............>>>>>......................
.......<<<<<<<<<<.........>>>>.>>>>>><<<<<<<<<<<..
.....[(((((.....>>>>....>>>>>>>..........))))).].<
<<.....<<<...((...>>>.....>>>.............))......
<<<<....<<...((.....>>....>>>>................))..
..>>>>.....>>>...>......>>>>>>>>.....<<<.......>>>
..>>>>>>>....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8vs9 Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon.
Resolution3.9 Å
Binding residue
(original residue number in PDB)		Y24 E31 A32 G33 L34 A35 L36 V41 K42 R45 D53 Y55 G61 V75 A76 K89 L91 L92 N93 Q94 E96 E107 G108 T110 W122 C123 K124 K133 K134
Binding residue
(residue number reindexed from 1)		Y14 E21 A22 G23 L24 A25 L26 V31 K32 R35 D43 Y45 G51 V65 A66 K79 L81 L82 N83 Q84 E86 E97 G98 T100 W112 C113 K114 K123 K124
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Molecular Function
External links
PDB RCSB:8vs9, PDBe:8vs9, PDBj:8vs9
PDBsum8vs9
PubMed38500588
UniProtA0A2X1N680

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