Structure of PDB 6zj3 Chain LX Binding Site BS04

Receptor Information

>6zj3 Chain LX (length=219) Species: 3039 (Euglena gracilis)

VKKGNAPVPNAHFHKHWNPTGSQKGHVRCFFKQGPQKKIRRARRQKKAAA
VFPRPVKGPLRPIVHCKSQRFNMKTRLGRGFTTLELKTAGLTDRRYARTI
GISVDRRRRNHCEESLALNAERIKTYLSKLVLFPLKAGKKLPEGVTEEDI
KNPVQSKQDGFPKASSYGKNALKPEAPRKLTDQEKKRLTFQFLRKVQRDT
KMVGKRIKRKAKKEAKAAK

Ligand information

>6zj3 Chain LE (length=652)

ucgcuggugguugggcuggggggugugcggcugcaccgggggcugcaccg
uacggugguccccuugcuggcugcaccgucccccagccugaccccaguga
gaaauuggcagcagagcuuggcacgcagugcugcucucugcccgucucga
aacacggaccaaggagucuaaggagcuugccagucggauggcuuccaaaa
ccuugaggcguggugaaggcaacuauccuuccagauggggcuagucucug
cauggaacgaccggacccgaaguccaguggacaggguuucgagugcuugc
aagguccuugggacccgaaagguggugaacuauaccguucuacggugaag
ccaugggaaacugugguggaagccggucgcuguucugacgugcaaauugu
guagccugagugcggcauaggggugaaaggccaaucgagccaccuaguag
cugguucccuucgaaguuucccucaggauagcugggauccaaugaugcaa
agugugacugguugcauccgguaaagcaacgcaugagaggcuggggagcu
ccucaaccuauccucgaacugugaaugggugcggacaggcaugcuucuuu
gccacgacaggaggcuguguaacagcaguucuccccgucuucugagcaug
uu

<<<<<<<.<<<<<<<<<<<<<<<<<<<<<<<<<....<<<<<...<<<<<
..>>>>>.>>>>>....>>>>>>>>>.>>>>>>>>>>>>>>>>>>>>>>>
..........<<.............................<<<<.....
...>>>>.........<<<<<<<<.<<<<<..<<<....<<.........
>>....>>>...<<....>>........<<<<<...<<<<....>>>>..
..>>>>>..<<<<<<<<<...<<<<...>>>>.>>>>.>>>.>>....>>
>>>.>>>>>>>>.<<.<..<<<<<<<.....<<.<<<<.<..<<<....<
<<<<<<....>>>>>>>.....>>>...<<<.....<<........>>..
..>>>....>.>>>>.>>...<<<.....>>>......>>>>>>...>..
>.>>............<.<<<....>>>.>................>>..
.............<<<<<<<...<<<...<<.<.<<.<<<.<<<<<<..>
>>>>>.>>>.>>.>>>..>>.>...>>>>>>>.....<<<<<<<<.<...
.....<<<.<<<<.<<<<......>>>>..>>>>..>>>....>>>>>>>
>>

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6zj3 Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.
• Resolution: 3.15 Å
• Binding residue (original residue number in PDB): V2 K3 K4 P8 P10 A12 F14 H15 W18 N19 T21 S23 Q24 F32 Q34 G35 P36 K39 R41 R42 R45 K187 R188 L189 F191 Q192 F193 R195 K196 Q198 R199 K202 R207 R210
• Binding residue (residue number reindexed from 1): V1 K2 K3 P7 P9 A11 F13 H14 W17 N18 T20 S22 Q23 F31 Q33 G34 P35 K38 R40 R41 R44 K186 R187 L188 F190 Q191 F192 R194 K195 Q197 R198 K201 R206 R209

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 09:33:30 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zj3', asym_id = 'LX', bs = 'BS04', title = 'Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zj3', asym_id='LX', bs='BS04', title='Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6zj3', asym_id = 'LX'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6zj3', asym_id='LX')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>