Structure of PDB 5gm6 Chain J Binding Site BS04

Receptor Information

>5gm6 Chain J (length=103) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

SRHQFDLIMCLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSF
GKQAKNCIICNLNVGVNDAFYCWECCRLGKDKDGCPRILNLGSNRLDRHF
EKK

Ligand information

InChI=1S/Zn/q+2

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Zn

Name

ZINC ION

PDB chain

5gm6 Chain J Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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PDB	5gm6 Structure of a yeast activated spliceosome at 3.5 angstrom resolution
Resolution	3.5 Å
Binding residue (original residue number in PDB)	C26 C58
Binding residue (residue number reindexed from 1)	C25 C57
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0008270	zinc ion binding

	Biological Process
GO:0000245	spliceosomal complex assembly
GO:0000398	mRNA splicing, via spliceosome
GO:0006397	mRNA processing
GO:0008380	RNA splicing
GO:0009410	response to xenobiotic stimulus
GO:1903241	U2-type prespliceosome assembly

	Cellular Component
GO:0005634	nucleus
GO:0005681	spliceosomal complex
GO:0005684	U2-type spliceosomal complex
GO:0005686	U2 snRNP
GO:0071011	precatalytic spliceosome

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:5gm6, PDBe:5gm6, PDBj:5gm6
PDBsum	5gm6
PubMed	27445306
UniProt	Q06835\|RDS3_YEAST Pre-mRNA-splicing factor RDS3 (Gene Name=RDS3)

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