Structure of PDB 5m0r Chain I Binding Site BS04

Receptor Information
>5m0r Chain I (length=276) Species: 36374 (Visna/maedi virus EV1 KV1772) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
WIENIPLAEEEHNKWHQDAVSLHLEFGIPRTAAEDIVQQCDVCQENKMPS
TLRGSNKRGIDHWQVDYTHYEDKIILVWVETNSGLIYAERVKGETGQEFR
VQTMKWYAMFAPKSLQSDNGPAFVAESTQLLMKYLGIEHTTGIPWNPQSQ
ALVERTHQTLKNTLEKLIPMFNAFESALAGTLITLNIKRKGGLGTSPMDI
FIFNKEQQRIQQQSKSKQEKIRFCYYRTRKRGHPGEWQGPTQVLWGGDGA
IVVKDRGTDRYLVIANKDVKFIPPPK
Ligand information
>5m0r Chain T (length=41) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
caccggagcggatctcgcagtcgaccaccctaatcaagttt
Receptor-Ligand Complex Structure
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PDB5m0r A supramolecular assembly mediates lentiviral DNA integration.
Resolution8.2 Å
Binding residue
(original residue number in PDB)		R30 T51 L52 G93 E94 T95 G96 P121 A122 V124 A125 E126
Binding residue
(residue number reindexed from 1)		R30 T51 L52 G93 E94 T95 G96 P121 A122 V124 A125 E126
Enzymatic activity
Enzyme Commision number 2.7.7.-
2.7.7.49: RNA-directed DNA polymerase.
2.7.7.7: DNA-directed DNA polymerase.
3.1.-.-
3.1.13.2: exoribonuclease H.
3.1.26.4: ribonuclease H.
3.4.23.-
3.6.1.23: dUTP diphosphatase.
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding
Biological Process
GO:0015074 DNA integration

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Molecular Function
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Biological Process
External links
PDB RCSB:5m0r, PDBe:5m0r, PDBj:5m0r
PDBsum5m0r
PubMed28059770
UniProtP35956|POL_VILVK Gag-Pol polyprotein (Gene Name=pol)

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