Structure of PDB 3v0w Chain H Binding Site BS04

Receptor Information
>3v0w Chain H (length=214) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EVKLVESGGGLVQPGGSLSLSCAASGFTFSDYYMTWVRQAPGKAPEWLAL
IRNKRNGDTAEYSASVKGRFTISRDYSRSILHLQMNALRTEDSATYYCVR
QGRGYTLDYWGQGTSVTVSSAKTTAPSVYPLAPVGSSVTLGCLVKGYFPE
PVTLTWNSGSLSSGVHTFPAVLQSGLYTLSSSVTVTSSTWPSQSITCNVA
HPASSTKVDKKIEP
Ligand information
Ligand IDGMH
InChIInChI=1S/C7H14O7/c8-1-2(9)6-4(11)3(10)5(12)7(13)14-6/h2-13H,1H2/t2-,3-,4-,5-,6+,7-/m0/s1
InChIKeyBGWQRWREUZVRGI-QQABCQGCSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[C@H](O)[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C(C(C1C(C(C(C(O1)O)O)O)O)O)O
CACTVS 3.341OC[CH](O)[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)C(O)CO
OpenEye OEToolkits 1.5.0C([C@@H]([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O)O
FormulaC7 H14 O7
NameL-glycero-alpha-D-manno-heptopyranose;
L-glycero-alpha-D-manno-heptose;
L-glycero-D-manno-heptose;
L-glycero-manno-heptose;
L-GLYCERO-D-MANNO-HEPTOPYRANOSE
ChEMBL
DrugBankDB04526
ZINC
PDB chain3v0w Chain A Residue 9 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3v0w Antibody WN1 222-5 mimics Toll-like receptor 4 binding in the recognition of LPS.
Resolution1.73 Å
Binding residue
(original residue number in PDB)
Y33 Q95 G98 Y99
Binding residue
(residue number reindexed from 1)
Y33 Q101 G104 Y105
Annotation score1
External links