Structure of PDB 7v01 Chain F Binding Site BS04

Receptor Information
>7v01 Chain F (length=693) Species: 176279 (Staphylococcus epidermidis RP62A) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNKKNILMYGSLLHDIGKIIYRSGDHTFSRGTHSKLGHQFLSQFSEFKDN
EVLDNVAYHHYKELAKANLDNDNTAYITYIADNIASLFNFDKYTPLYSVF
NIVNSEKLKQTNGKFKENIQYSSGNYTTLMKDMSHDLEHKLSIKEGTFPS
LLQWTESLWQYVPSSTNKNQLIDISLYDHSRITCAIASCIFDYLNENNIH
NYKDELFSKYENTKSFYQKEAFLLLSMDMSGIQDFIYNISGSKALKSLRS
RSFYLELMLEVIVDQLLERLELARANLLYTGGGHAYLLVSNTDKVKKKIT
QFNNELKKWFMSEFTTDLSLSMAFEKCSGDDLMNTSGNYRTIWRNVSSKL
SDIKAHKYSAEDILKLNHFHSYGDRECKECLRSDIDINDDGLCSICEGII
NISNDLRDKSFFVLSETGKLKMPFNKFISVIDYEEAEMLVQNNNQVRIYS
KNKPYIGIGISTNLWMCDYDYASQNQDMREKGIGSYVDREEGVKRLGVVR
ADIDNLGATFISGIPEKYNSISRTATLSRQLSLFFKYELNHLLENYQITA
IYSGGDDLFLIGAWDDIIEASIYINDKFKEFTLDKLTLSAGVGMFSGKYP
VSKMAFWDEFKKNILEEKLLVLQQGFSQTDEHGKAFIYKMLALLRNNEAI
NIARLAYLLARSKMNEDFTSKIFNWAQNDKDKNQLITALEYYI
Ligand information
Ligand IDATP
InChIInChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyZKHQWZAMYRWXGA-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
FormulaC10 H16 N5 O13 P3
NameADENOSINE-5'-TRIPHOSPHATE
ChEMBLCHEMBL14249
DrugBankDB00171
ZINCZINC000004261765
PDB chain7v01 Chain F Residue 802 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7v01 Structures of an active type III-A CRISPR effector complex.
Resolution3.67 Å
Binding residue
(original residue number in PDB)		Y309 H314 D532 I533 D534 L536 F540 S558 D586
Binding residue
(residue number reindexed from 1)		Y279 H284 D502 I503 D504 L506 F510 S528 D556
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0004527 exonuclease activity
GO:0005524 ATP binding
Biological Process
GO:0051607 defense response to virus

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7v01, PDBe:7v01, PDBj:7v01
PDBsum7v01
PubMed35714601
UniProtQ5HK89

[Back to BioLiP]