Structure of PDB 6dmf Chain F Binding Site BS04

Receptor Information
>6dmf Chain F (length=514) Species: 411476 (Bacteroides ovatus ATCC 8483) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DPNAQLTTAQLQTYGDLSMMEIYRNYHYAFTQQLMGCWNTTNYGGRHTLD
NNEMSRIWTSFYTQSLKNIIDAQYRTAEDAEKVNINSVLRIYRVYLMSII
TDTYGDAPFSEAGLKFNPKYDKQEDIYNAFFLELEDAVNKIDPTKDKVTG
DLIYAGDVTKWQQLANSLRLRFAMRISSVNPTKAQTEFENALAANGGVIT
DASSDALIKYMTIAFSFGQEAYSDYRGNSLSQLLFGNDPANNPSYLCSTF
FNQLYNSGDPRTFKISRCYYDGLMSATSPDNRVDITQEMIEKGIAFSPRD
PGAYSWEPWPTGYDSDICAELAVNNPSVTATMAREVEPKLANNFLKSDNP
GVVMTSAEVKFLMAEATVKKWNVGSVSAEDLYKQGVRAAIDFLTDNYGCT
ATTDAEFDAFIQDKGAFGHTDNQKLEAINTQAWILHFTNPAECWANVRRS
GYPKLKSPAEYGFGQYLTGGTEIPVRLCYPVLESSYNKKSYNEAIERMGG
TDNWHSLLWWDTEN
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6dmf Chain F Residue 607 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6dmf Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		R492 D555 E557
Binding residue
(residue number reindexed from 1)		R448 D511 E513
Annotation score4
External links