Structure of PDB 7ptr Chain E Binding Site BS04

Receptor Information
>7ptr Chain E (length=725) Species: 309800 (Haloferax volcanii DS2) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ERGNLDADSESFNKTIQSGDRVFLGEEISTDAGLGASNPLLTGTAGNSEG
VSLDLSSPIPQTTENQPLGTYDVDGSGSATTPNVTLLAPRITDSEILTSS
GGDVTGSAISSSDAGNLYVNADYNYESAEKVEVTVEDPSGTDITNEVLSG
TDTFVDDGSIGSTSSTGGGVGIDMSDQDAGEYTIILEGAEDLDFGDATET
MTLTISSQDEIGIELDSESVTQGTDVQYTVTNGIDGNEHVVAMDLSDLQN
DATTEQAKEVFRNIGDTSEVGIANSSATNTSGSSTGPTVETADIAYAVVE
IDGASAVGGIETQYLDDSEVDLEVYDAGVSATAAVGQDATNDITLTIEEG
GTTLSSPTGQYVVGSEVDINGTATSSDSVAIYVRDDGDWQLLEIGGDNEI
SVDSDDTFEEEDIALSGLSGDGSSILSLTGTYRIGVIDASDADVGGDGSV
DDSLTTSEFTSGVSSSNSIRVTDQALTGQFTTINGQVAPVETGTVDINGT
ASGANSVLVIFVDERGNVNYQEVSVDSDGTYDEDDITVGLTQGRVTAHIL
SVGRDSAIGDGSLPSGPSNGATLNDLTGYLDTLDQNNNNGEQINELIASE
TVDETASDDLIVTETFRLAESSTSIDSIYPDAAEAAGINPVATGETMVIA
GSTNLKPDDNTISIEVTNEDGTSVALEDTDEWNNDGQWMVEIDTTDFETG
TFTVEADDGDNTDTVNVEVVSERED
Ligand information
Ligand IDBGC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-VFUOTHLCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namebeta-D-glucopyranose;
beta-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL1614854
DrugBankDB02379
ZINCZINC000003833800
PDB chain7ptr Chain E Residue 904 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7ptr Complete atomic structure of a native archaeal cell surface.
Resolution3.46 Å
Binding residue
(original residue number in PDB)		E35 N47 T49
Binding residue
(residue number reindexed from 1)		E1 N13 T15
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0071555 cell wall organization
Cellular Component
GO:0005576 extracellular region
GO:0005886 plasma membrane
GO:0030115 S-layer

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7ptr, PDBe:7ptr, PDBj:7ptr
PDBsum7ptr
PubMed34818541
UniProtP25062|CSG_HALVD Cell surface glycoprotein (Gene Name=csg)

[Back to BioLiP]