Structure of PDB 7bkd Chain E Binding Site BS04

Receptor Information

>7bkd Chain E (length=411) Species: 323259 (Methanospirillum hungatei JF-1)

AAKGDMLYAWAKDAEIQKKGECGGAVTALLKHALETKMVDAVVAIKKGKD
LYDAVPTVITNPEDIIQTAGSLHCGTLLIPKLIKKYLNGAKDMKLAVTCK
GCDAMAFYELAKRNQINLDNIIMIGVNCGGSVSPVTARKMISNKFGVDPD
TVHKEEIDKGQFIIEYEGGHKGIKIDELEEEGYGRRSNCRRCKMKIPRQA
DIAAGNWGVIGDKAGKATFLEICSEKGANLVNSAQSKGALEISPADPKGI
DIRAKVEKAMFNLGDEWRHRDFEGMGKGKDRLKLMMSESSKCIKCYACVE
ACPICYCIECSTKKPWYIAPGVLPTSFMFHLIRFAHVSDSCINCGQCEEL
CPMEIPNALFMHSQQVEIEKMFGHIPGQDMTPPIHAFVEEKAERARLDAT
GTDSIYTNIFT

Ligand information

• Ligand ID: SF4
• InChI: InChI=1S/4Fe.4S
• InChIKey: LJBDFODJNLIPKO-UHFFFAOYSA-N
• SMILES:
  OpenEye OEToolkits 2.0.7: [S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
  CACTVS 3.385: S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
• Formula: Fe4 S4
• Name: IRON/SULFUR CLUSTER
• PDB chain: 7bkd Chain E Residue 504

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7bkd Three-megadalton complex of methanogenic electron-bifurcating and CO 2 -fixing enzymes.
• Resolution: 3.0 Å
• Binding residue (original residue number in PDB): G102 C103 C129 C190 C193
• Binding residue (residue number reindexed from 1): G101 C102 C128 C189 C192
• Annotation score: 4

Enzymatic activity

• Enzyme Commision number: 1.2.99.-

Gene Ontology

Molecular Function

• GO:0016491 oxidoreductase activity
• GO:0051536 iron-sulfur cluster binding
• GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor

External links

• PDB: RCSB:7bkd, PDBe:7bkd, PDBj:7bkd
• PDBsum: 7bkd
• PubMed: 34516836
• UniProt: Q2FME3