Structure of PDB 8jq5 Chain D Binding Site BS04

Receptor Information
>8jq5 Chain D (length=417) Species: 47715 (Lacticaseibacillus rhamnosus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MVKPEEVDKAYEVAKQRYAEIGVDTDAAMKELEKVPLSVHCWQGDDIHGF
LFPNQSGNYPGIARTPDELAGDMHEALSLIPGKHRVQLHAIYAVTDKKRD
LDTLEPEDFDYWIDWAKQEGVGLDFNGTFFSHPMVKDNMTVSSPDPKVRD
FWIRHGKISREISNYIGEKLGSQVVNNFWLPDGFKDNPIDKKTPRLRLLK
ALDEIIKDPLPEKNTIESFEGKLFGTGIESYTTGSHEFYQNYAISRNKLW
TIDAGHFHPTEDVSDKFSAFFPFGKGLFMHVSRPVRWDSDHVVIMDDALI
RITRSLVRDGYLDRTHIGLDFFDATINRVAAWVVGARATQKSLLQAMLAP
IDQLKKDELNADFTTRLIETEELKSFPFGAVWDKFCQDHNTPVGFDWMNN
IHQYEKDVQFKRDAKLV
Ligand information
Ligand IDPSV
InChIInChI=1S/C6H12O6/c7-1-3-4(9)5(10)6(11,2-8)12-3/h3-5,7-11H,1-2H2/t3-,4-,5-,6+/m1/s1
InChIKeyRFSUNEUAIZKAJO-KAZBKCHUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C([C@@H]1[C@H]([C@H]([C@@](O1)(CO)O)O)O)O
ACDLabs 11.02OC1C(O)C(OC1(O)CO)CO
CACTVS 3.352OC[CH]1O[C](O)(CO)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.0C(C1C(C(C(O1)(CO)O)O)O)O
CACTVS 3.352OC[C@H]1O[C@@](O)(CO)[C@H](O)[C@@H]1O
FormulaC6 H12 O6
Namealpha-D-psicofuranose;
alpha-D-psicose;
D-psicose;
psicose
ChEMBL
DrugBank
ZINC
PDB chain8jq5 Chain D Residue 504 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8jq5 X-ray structure and characterization of a probiotic Lactobacillus rhamnosus Probio-M9 L-rhamnose isomerase.
Resolution1.73 Å
Binding residue
(original residue number in PDB)		W187 E228 K230 H264 D328
Binding residue
(residue number reindexed from 1)		W179 E220 K222 H256 D320
Annotation score1
Enzymatic activity
Enzyme Commision number 5.3.1.14: L-rhamnose isomerase.
Gene Ontology
Molecular Function
GO:0008740 L-rhamnose isomerase activity
GO:0016853 isomerase activity
GO:0030145 manganese ion binding
GO:0046872 metal ion binding
Biological Process
GO:0019299 rhamnose metabolic process
GO:0019301 rhamnose catabolic process
GO:0019324 L-lyxose metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8jq5, PDBe:8jq5, PDBj:8jq5
PDBsum8jq5
PubMed38430263
UniProtA0A171J5T1

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