Structure of PDB 7ye2 Chain D Binding Site BS04

Receptor Information
>7ye2 Chain D (length=1140) Species: 565050 (Caulobacter vibrioides NA1000) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TFDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARIFGPT
KDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIW
FLKSLPSRIAMMLDMPLKDIERVLYFEYYIVTEPGPLKQHQLLSEDDYMR
AQEEYGDDSFTAEIGAEAIQNLLKAIDLEKEAERLREELSGTVSDMKQKK
FSKRLKILEAFQESGNRPEWMVLTVVPVIPPELRPLVPLDGGRFATSDLN
DLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQESVDALFDNGRRGRVI
TGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHEC
GLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVI
REHPVLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQM
AVHVPLSLEAQLEARVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLSVA
RDGEPGEGKIFADLGEIEAAMDAGVVSLHAKIKARHTEMTPEGVLLRKVI
DTTPGRMKIAALLPHHPQIGHRLIEKALTKKEIGNLIDIVYRHCGQKATV
IFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVEETRKLAEEYEQQY
ITKGEKYNKVVDAWAKATDRVADEMMAELQMKHKDENGREKEINAIYMMA
HSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFNST
HGARKGLADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRAVV
EGGDVLVSLGSRVLGRFTAEDVKDPGTGELVVPADTYIDENIADAIEAAV
VQSVKVRSVLTCEAKIGVCGACYGRDLARGTPVNIGEAVGVIAAQSIGEP
GTQLTITGGLPRVAELFEARRPKDCAVIAEMDGRVEFGKDYKNKRRIKIT
PDKHIAVHDGDYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEVY
RLQGVPINDKHIETIVRQMLQKVEILEPGDTGLIKGDHLDKPEFDKEQEK
AIARPAVTQPVLLGITKASLQTKSFISAASFQETTRVLTEASVHGKTDTL
EGLKENVIVGRLIPAGTGSYLRSLQRVAAKRDEQLAQQRE
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain7ye2 Chain D Residue 2002 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7ye2 Cryo-EM structures of Caulobacter crescentus transcription activation complex with an essential cell cycle regulator GcrA
Resolution3.8 Å
Binding residue
(original residue number in PDB)		L72 C86
Binding residue
(residue number reindexed from 1)		L56 C70
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7ye2, PDBe:7ye2, PDBj:7ye2
PDBsum7ye2
PubMed
UniProtA0A0H3C4W8

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