Structure of PDB 7ukt Chain D Binding Site BS04

Receptor Information
>7ukt Chain D (length=471) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GPNICTTRGVSSCQQCLAVSPMCAWCSDEALPLGSPRCDLKENLLKDNCA
PESIEFPVSEARVLEDRPLSDKGSGDSSQVTQVSPQRIALRLRPDDSKNF
SIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLR
IGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQV
TRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTT
DAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLS
QKNINLIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGK
IRSKVELEVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIE
AKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNN
GNGTFECGVCRCGPGWLGSQC
Ligand information
Ligand IDNJF
InChIInChI=1S/C18H24N4O3/c19-18(20)14-3-1-13(2-4-14)16-10-15(25-21-16)11-22-7-5-12(6-8-22)9-17(23)24/h1-4,12,15H,5-11H2,(H3,19,20)(H,23,24)/t15-/m0/s1
InChIKeyDSCOBQPYUCWBKA-HNNXBMFYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1cc(ccc1C2=NOC(C2)CN3CCC(CC3)CC(=O)O)C(=N)N
CACTVS 3.385NC(=N)c1ccc(cc1)C2=NO[C@H](CN3CCC(CC3)CC(O)=O)C2
CACTVS 3.385NC(=N)c1ccc(cc1)C2=NO[CH](CN3CCC(CC3)CC(O)=O)C2
OpenEye OEToolkits 2.0.7[H]/N=C(\c1ccc(cc1)C2=NO[C@@H](C2)CN3CCC(CC3)CC(=O)O)/N
ACDLabs 12.01O=C(O)CC1CCN(CC1)CC1CC(=NO1)c1ccc(cc1)C(=N)N
FormulaC18 H24 N4 O3
Name(1-{[(5S)-3-(4-carbamimidoylphenyl)-4,5-dihydro-1,2-oxazol-5-yl]methyl}piperidin-4-yl)acetic acid
ChEMBL
DrugBank
ZINC
PDB chain7ukt Chain D Residue 2005 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7ukt A general chemical principle for creating closure-stabilizing integrin inhibitors.
Resolution2.36994 Å
Binding residue
(original residue number in PDB)
S121 Y122 N215 R216
Binding residue
(residue number reindexed from 1)
S121 Y122 N215 R216
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:7ukt, PDBe:7ukt, PDBj:7ukt
PDBsum7ukt
PubMed36113427
UniProtP05106|ITB3_HUMAN Integrin beta-3 (Gene Name=ITGB3)

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