Structure of PDB 6cgu Chain D Binding Site BS04

Receptor Information
>6cgu Chain D (length=207) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SWMWNQFFLLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFII
NENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDIN
DNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQ
GQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTT
VNITLTD
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain6cgu Chain D Residue 304 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6cgu Homophilic and Heterophilic Interactions of Type II Cadherins Identify Specificity Groups Underlying Cell-Adhesive Behavior.
Resolution1.9 Å
Binding residue
(original residue number in PDB)		E117 D172 N175
Binding residue
(residue number reindexed from 1)		E117 D172 N175
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Biological Process
GO:0007155 cell adhesion
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
GO:0098609 cell-cell adhesion
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6cgu, PDBe:6cgu, PDBj:6cgu
PDBsum6cgu
PubMed29742438
UniProtP97326|CADH6_MOUSE Cadherin-6 (Gene Name=Cdh6)

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