Structure of PDB 5x8f Chain D Binding Site BS04

Receptor Information
>5x8f Chain D (length=484) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LTEQPNWLMQRAQLTPERIALIYEDQTVTFAELFAASKRMAEQLAAHSVR
KGDTAAILLQNRAEMVYAVHACFLLGVKAVLLNTKLSTHERLFQLEDSGS
GFLLTDSSFEKKEYEHIVQTIDVDELMKEAAEEIEIEAYMQMDATATLMY
TSGTTGKPKGVQQTFGNHYFSAVSSALNLGITEQDRWLIALPLFHISGLS
ALFKSVIYGMTVVLHQRFSVSDVLHSINRHEVTMISAVQTMLASLLEETN
RCPESIRCILLGGGPAPLPLLEECREKGFPVFQSYGMTETCSQIVTLSPE
FSMEKLGSAGKPLFSCEIKIERDGQVCEPYEHGEIMVKGPNVMKSYFNRE
SANEASFQNGWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVES
VLLSHPAVAEAGVSGAEDKKWGKVPHAYLVLHKPVSAGELTDYCKERLAK
YKRPKKFFVLDRLPRNASNKLLRNQLKDARKGEL
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5x8f Chain D Residue 508 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5x8f Crystal structure of the thioesterification conformation of Bacillus subtilis o-succinylbenzoyl-CoA synthetase reveals a distinct substrate-binding mode
Resolution1.763 Å
Binding residue
(original residue number in PDB)		E392 N393 Y452
Binding residue
(residue number reindexed from 1)		E391 N392 Y451
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) T152 S172 H196 T289 E290 I388 N393 K471
Catalytic site (residue number reindexed from 1) T151 S171 H195 T288 E289 I387 N392 K470
Enzyme Commision number 6.2.1.26: o-succinylbenzoate--CoA ligase.
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0008756 o-succinylbenzoate-CoA ligase activity
GO:0016405 CoA-ligase activity
GO:0016874 ligase activity
Biological Process
GO:0009234 menaquinone biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5x8f, PDBe:5x8f, PDBj:5x8f
PDBsum5x8f
PubMed28559280
UniProtP23971|MENE_BACSU 2-succinylbenzoate--CoA ligase (Gene Name=menE)

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