Structure of PDB 2ihv Chain D Binding Site BS04

Receptor Information
>2ihv Chain D (length=563) Species: 1901 (Streptomyces clavuligerus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVEGIDFVLTRHEFTA
GVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSE
SHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEP
VGPSFISLPVDLLGSSEGIDTTVPNPPANTPAKPVGVVADGWQKAADQAA
ALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVG
HELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQKG
IEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHD
IEPLRARIAEFLADPETYEDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDI
GFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLI
AGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDP
AVKFGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFLIEVPVN
YDFQPGGFGALSI
Ligand information
Ligand IDGVA
InChIInChI=1S/C6H13N3O2/c7-6(8)9-4-2-1-3-5(10)11/h1-4H2,(H,10,11)(H4,7,8,9)
InChIKeyUKUBCVAQGIZRHL-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0[H]/N=C(/N)\NCCCCC(=O)O
CACTVS 3.341NC(=N)NCCCCC(O)=O
OpenEye OEToolkits 1.5.0[H]N=C(N)NCCCCC(=O)O
ACDLabs 10.04O=C(O)CCCCNC(=[N@H])N
FormulaC6 H13 N3 O2
Name5-{[AMINO(IMINO)METHYL]AMINO}PENTANOIC ACID;
5-GUANIDINOVALERIC ACID
ChEMBLCHEMBL178889
DrugBank
ZINCZINC000004654884
PDB chain2ihv Chain D Residue 603 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2ihv Structural and mechanistic studies on N(2)-(2-carboxyethyl)arginine synthase.
Resolution2.3 Å
Binding residue
(original residue number in PDB)		Y271 D301 H415 L571
Binding residue
(residue number reindexed from 1)		Y261 D291 H405 L561
Annotation score2
Enzymatic activity
Catalytic site (original residue number in PDB) V33 G35 R36 E37 A38 E57 T80 H120 Q121 C122 V170 I275 L302 I410 S436 F438 D463 N490 T492 N493 L495 I496 Y499 Y561
Catalytic site (residue number reindexed from 1) V23 G25 R26 E27 A28 E47 T70 H110 Q111 C112 V160 I265 L292 I400 S426 F428 D453 N480 T482 N483 L485 I486 Y489 Y551
Enzyme Commision number 2.5.1.66: N(2)-(2-carboxyethyl)arginine synthase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003824 catalytic activity
GO:0003984 acetolactate synthase activity
GO:0016740 transferase activity
GO:0030976 thiamine pyrophosphate binding
GO:0033848 N2-(2-carboxyethyl)arginine synthase activity
GO:0046872 metal ion binding
GO:0050660 flavin adenine dinucleotide binding
Biological Process
GO:0009097 isoleucine biosynthetic process
GO:0009099 L-valine biosynthetic process
Cellular Component
GO:0005948 acetolactate synthase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2ihv, PDBe:2ihv, PDBj:2ihv
PDBsum2ihv
PubMed19477162
UniProtQ9LCV9|CEAS_STRCL N(2)-(2-carboxyethyl)arginine synthase (Gene Name=ceaS)

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