Structure of PDB 2cdp Chain D Binding Site BS04

Receptor Information
>2cdp Chain D (length=130) Species: 203122 (Saccharophagus degradans 2-40) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ASIAVEAENFNAVGGTFPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGN
YTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSV
YLSAGTHQVRLHGAGSNNWQWNLDKFTLSN
Ligand information
Ligand IDAAL
InChIInChI=1S/C6H10O5/c7-3-2-1-10-5(3)4(8)6(9)11-2/h2-9H,1H2/t2-,3+,4-,5+,6+/m0/s1
InChIKeyDCQFFOLNJVGHLW-DSOBHZJASA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C1[C@H]2[C@H]([C@@H](O1)[C@@H]([C@@H](O2)O)O)O
ACDLabs 11.02OC2OC1C(O)C(OC1)C2O
OpenEye OEToolkits 1.7.0C1C2C(C(O1)C(C(O2)O)O)O
CACTVS 3.352O[CH]1O[CH]2CO[CH]([CH]1O)[CH]2O
CACTVS 3.352O[C@@H]1O[C@H]2CO[C@@H]([C@@H]1O)[C@@H]2O
FormulaC6 H10 O5
Name3,6-anhydro-alpha-L-galactopyranose;
3,6-ANHYDRO-L-GALACTOSE;
3,6-anhydro-alpha-L-galactose;
3,6-anhydro-galactose
ChEMBL
DrugBank
ZINCZINC000005851684
PDB chain2cdp Chain H Residue 6 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB2cdp Family 6 Carbohydrate Binding Modules in Beta-Agarases Display Exquisite Selectivity for the Non- Reducing Termini of Agarose Chains.
Resolution1.59 Å
Binding residue
(original residue number in PDB)		N39 Y40 W97 W127 N130
Binding residue
(residue number reindexed from 1)		N31 Y32 W89 W119 N122
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding

View graph for
Molecular Function
External links
PDB RCSB:2cdp, PDBe:2cdp, PDBj:2cdp
PDBsum2cdp
PubMed16601125
UniProtQ6DN99

[Back to BioLiP]