Structure of PDB 5vie Chain C Binding Site BS04

Receptor Information
>5vie Chain C (length=667) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT
FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG
NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV
ADQLELPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHP
KDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPD
DGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGA
RNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKL
AYMPHTFFIGDHANMFPHLKKKAVIDFIYDNRIVLNGIDLKAFLDSLPDV
KIVNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAAT
GEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVP
NSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLAD
VCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELI
AKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERL
YLQMWEHYAANKPDHMI
Ligand information
Ligand ID9CD
InChIInChI=1S/C10H17NO6/c1-2-3-6(13)11-7-9(15)8(14)5(4-12)17-10(7)16/h2-3,5,7-10,12,14-16H,4H2,1H3,(H,11,13)/b3-2+/t5-,7-,8-,9-,10-/m1/s1
InChIKeyGANGCWNSYXFAHD-SUZWSAGVSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6C/C=C/C(=O)N[C@@H]1[C@H]([C@@H]([C@H](OC1O)CO)O)O
ACDLabs 12.01OC1C(C(OC(C1O)CO)O)NC([C@H]=CC)=O
OpenEye OEToolkits 2.0.6CC=CC(=O)NC1C(C(C(OC1O)CO)O)O
CACTVS 3.385C\C=C\C(=O)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O)[C@@H]1O
CACTVS 3.385CC=CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O
FormulaC10 H17 N O6
Name2-{[(2E)-but-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose;
2-{[(2E)-but-2-enoyl]amino}-2-deoxy-beta-D-glucose;
2-{[(2E)-but-2-enoyl]amino}-2-deoxy-D-glucose;
2-{[(2E)-but-2-enoyl]amino}-2-deoxy-glucose
ChEMBL
DrugBank
ZINC
PDB chain5vie Chain C Residue 1102 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5vie Electrophilic probes for deciphering substrate recognition by O-GlcNAc transferase.
Resolution2.6 Å
Binding residue
(original residue number in PDB)
H498 M501 P559 T560 L653 P656 F694 Y841 C917 H920
Binding residue
(residue number reindexed from 1)
H162 M165 P223 T224 L317 P320 F358 Y482 C558 H561
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.1.255: protein O-GlcNAc transferase.
External links
PDB RCSB:5vie, PDBe:5vie, PDBj:5vie
PDBsum5vie
PubMed29058723
UniProtO15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (Gene Name=OGT)

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