Structure of PDB 5oa2 Chain C Binding Site BS04

Receptor Information
>5oa2 Chain C (length=435) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SFEKTPAIKIVGNKFFDSESGEQFFIKGIAYQLQSYIDALADPKICLRDI
PFLKMLGVNTLRVYAIDPTKSHDICMEALSAEGMYVLLDLSEPDISINRE
NPSWDVHIFERYKSVIDAMSSFPNLLGYFAGNEVTNDHTNTFASPFVKAA
IRDAKEYISHSNHRKIPVGYSTNDDAMTRDNLARYFVCGDVKADFYGINM
YEWCGYSTYGTSGYRERTKEFEGYPIPVFFSEFGCNLVRPRPFTEVSALY
GNKMSSVWSGGLAYMYFEEENEYGVVKINDNDGVDILPDFKNLKKEFAKA
DPKGITEEEYLTESVECPHIAVGVWEANEKLPETPDRSKCACLDEILPCE
IVPFESGKYEEYFSYLCSKVDCSDILANGKTGEYGEFSDCSVEQKLSLQL
SKLYCKIGANDRHCPLNDKNVYFNLESLQPCKNVF
Ligand information
Ligand ID9PW
InChIInChI=1S/C28H41N4O18/c33-6-14-17(36)20(39)21(40)27(47-14)50-25-19(38)16(8-35)48-28(23(25)42)49-24-18(37)15(7-34)46-26(22(24)41)31-5-12(29-30-31)10-45-9-11-1-3-13(4-2-11)32(43)44/h1-5,14-28,33-42H,6-10H2,(H,43,44)/q+1/t14-,15-,16-,17-,18-,19-,20+,21-,22-,23-,24+,25+,26-,27+,28+/m1/s1
InChIKeyZVBWPZDXYFMQRY-ZJLPYKFYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC[CH]1O[CH](O[CH]2[CH](O)[CH](CO)O[CH](O[CH]3[CH](O)[CH](CO)O[CH]([CH]3O)n4cc(COCc5ccc(cc5)[N+](O)=O)nn4)[CH]2O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 2.0.6c1cc(ccc1COCc2cn(nn2)C3C(C(C(C(O3)CO)O)OC4C(C(C(C(O4)CO)O)OC5C(C(C(C(O5)CO)O)O)O)O)O)[N+](=O)O
OpenEye OEToolkits 2.0.6c1cc(ccc1COCc2cn(nn2)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O)O)O)[N+](=O)O
CACTVS 3.385OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](CO)O[C@@H](O[C@H]3[C@H](O)[C@@H](CO)O[C@H]([C@@H]3O)n4cc(COCc5ccc(cc5)[N+](O)=O)nn4)[C@@H]2O)[C@H](O)[C@@H](O)[C@@H]1O
FormulaC28 H41 N4 O18
Name[4-[[1-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-4-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-4-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,5-bis(oxidanyl)oxan-2-yl]oxy-3,5-bis(oxidanyl)oxan-2-yl]-1,2,3-triazol-4-yl]methoxymethyl]phenyl]-oxidanyl-oxidanylidene-azanium
ChEMBL
DrugBank
ZINC
PDB chain5oa2 Chain C Residue 604 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5oa2 Inhibitors against Fungal Cell Wall Remodeling Enzymes.
Resolution2.15 Å
Binding residue
(original residue number in PDB)
Y107 S134 P136 S139 I140 N141 R142 V177 Y244 E275 Y307
Binding residue
(residue number reindexed from 1)
Y64 S91 P93 S96 I97 N98 R99 V134 Y201 E232 Y264
Annotation score1
Binding affinityMOAD: Kd=9.8uM
PDBbind-CN: -logKd/Ki=5.01,Kd=9.80uM
Enzymatic activity
Enzyme Commision number 2.4.1.-
External links
PDB RCSB:5oa2, PDBe:5oa2, PDBj:5oa2
PDBsum5oa2
PubMed29164827
UniProtQ06135|GAS2_YEAST 1,3-beta-glucanosyltransferase GAS2 (Gene Name=GAS2)

[Back to BioLiP]