Structure of PDB 9bcu Chain B Binding Site BS04

Receptor Information
>9bcu Chain B (length=1103) Species: 311400 (Thermococcus kodakarensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EPTLTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVVP
DIPNFKVKFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMI
PVVNGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGY
FIINGSERVIVSIEDLAPNKTLVERDERQNKVVAKVFSYRHGYRALITVE
RKKDGILYVTIPNVPKPVKFVYVMRALGLLTDKEIVEAVSDDPRIQQVLF
DNLEDASDISTQEEALDYIGRLALPGQPKEYRLRRAEHIIDNNLLPHMGV
DPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDL
FRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIE
HALATGSWPGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDL
HGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPEREVREYLMKMGVV
PIEERRPAPGLYRVYLNGVLIGTVEDGRKLVERIRADRRAGKISDVINVA
LYEDEEVKEVYINSDDGRVRRPLIVVENGKPKLTREHVEGIKNGTLTWSD
LIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVP
YPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSR
IMKAVGFEDRPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFR
TYEAEEKRYLGGQKDNFEVPSPNIQGYLGEKYYRHLDEDGLIFPESKVEG
KDVLVGRTSPPRFQGRRETSVTVRPSEKGVVDKVIVTETGDGTKLVKVTV
RDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIP
SRMTVGQLIEAIGGKVASLTGRRVDGTAFIGEPEEKLRKELEELGFKHSG
REIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQP
TEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGH
LALEDKRRGKVYCPVCGEDERISKVEMSYAFKLLLDELKAMVIRPSLRLK
DRV
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain9bcu Chain B Residue 1201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9bcu Structural basis of archaeal FttA-dependent transcription termination
Resolution2.2 Å
Binding residue
(original residue number in PDB)		C1065 C1083 C1086
Binding residue
(residue number reindexed from 1)		C1045 C1063 C1066
Annotation score1
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:9bcu, PDBe:9bcu, PDBj:9bcu
PDBsum9bcu
PubMed
UniProtQ5JE32

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