Structure of PDB 9b20 Chain B Binding Site BS04

Receptor Information

>9b20 Chain B (length=200) Species: 573 (Klebsiella pneumoniae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

TFSKNDVEIIARETLYRGFFSLDLYRFRHRLFNGGMSGEITREIFERGHA
AVLLPFDPVRDEVVLVEQIRIAAYDTSESPWLLEMVAGMIEAGETVEDVA
RREALEEAGLEVGRTKPILSYLASPGGTSERLSILVGEVDASTAKGIHGL
AEENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLHYHNLRNEWT

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

9b20 Chain B Residue 303 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	9b20 Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (AMP bound)
Resolution	1.55 Å
Binding residue (original residue number in PDB)	E112 E116 E164
Binding residue (residue number reindexed from 1)	E103 E107 E155
Annotation score	1

Enzymatic activity

Enzyme Commision number

3.6.1.13: ADP-ribose diphosphatase.

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0016787	hydrolase activity
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0019144	ADP-sugar diphosphatase activity
GO:0046872	metal ion binding
GO:0047631	ADP-ribose diphosphatase activity

	Biological Process
GO:0006753	nucleoside phosphate metabolic process
GO:0019693	ribose phosphate metabolic process

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:9b20, PDBe:9b20, PDBj:9b20
PDBsum	9b20
PubMed
UniProt	A0A0H3GVQ7

[Back to BioLiP]