Structure of PDB 8wmj Chain B Binding Site BS04

Receptor Information
>8wmj Chain B (length=732) Species: 52970 (Rhodomonas salina) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TKFPKFSQALAQDPATRRIWYGLATAHDLESHDGMTEENLYQKIFASHFG
HLAVIFLWTSGNLFHVAWQGNFEQWVLNPLKVKPIAHAIWDPHFGQPAVK
AFTKGGVSYPVNIATSGVYHWWYTIGMRSNTDLYAGSLFLLFLAGVFLFA
GWLHLQPKFRPGLSWFKNNESRLNHHLSGLFGFSSLAWSAHLIHVAIPEA
RGQHVCWDNFTKVAPHPAGLQPFFTGNWGAYAASPDTTNHIFGTSEGAGT
AILTFLGGFHPQTQALWLTDIAHHHLAIGVVFIFAGHMYRTNWGIGHSLK
EILDAHRPPGGRLGAGHKGIFETLTNSLHFQLGLALASLGVITSLVAQHM
YALPSYAFIAKDYVTQSALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPEQ
NKNNVLARILDHKEAIISHLSWVSLFLGFHTLGIYVHNDVVVAFGTPEKQ
ILVEPVFAQWIQASSGKALYGFDVLLSSTNSVAANASSNIWLPGWLEAIN
SGKNSLFLPIGPGDFLIHHAIALALHTTTLILVKGALDARGSKLMPDKKD
FGYAFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHITIW
QGNAGQFNESSTYIMGWLRDYLWLNSSPLINGYNPFGMNSLSVWSWMFLF
GHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSI
VQARLVGLIHFTAGYIFTYAAFVIASTTGKFG
Ligand information
Ligand IDCLA
InChIInChI=1S/C55H73N4O5.Mg/c1-13-39-35(8)42-28-44-37(10)41(24-25-48(60)64-27-26-34(7)23-17-22-33(6)21-16-20-32(5)19-15-18-31(3)4)52(58-44)50-51(55(62)63-12)54(61)49-38(11)45(59-53(49)50)30-47-40(14-2)36(9)43(57-47)29-46(39)56-42;/h13,26,28-33,37,41,51H,1,14-25,27H2,2-12H3,(H-,56,57,58,59,61);/q-1;+2/p-1/b34-26+;/t32-,33-,37+,41+,51-;/m1./s1
InChIKeyATNHDLDRLWWWCB-AENOIHSZSA-M
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCC1=C(C2=Cc3c(c(c4n3[Mg]56[N]2=C1C=C7N5C8=C(C(C(=O)C8=C7C)C(=O)OC)C9=[N]6C(=C4)C(C9CCC(=O)OCC=C(C)CCCC(C)CCCC(C)CCCC(C)C)C)C)C=C)C
CACTVS 3.385CCC1=C(C)C2=Cc3n4[Mg][N]5C(=CC1=N2)C(=C6C(=O)[CH](C(=O)OC)C(=C56)C7=NC(=Cc4c(C)c3C=C)[CH](C)[CH]7CCC(=O)OCC=C(C)CCC[CH](C)CCC[CH](C)CCCC(C)C)C
ACDLabs 12.01O=C(OC)C1C(=O)C2=C(C)C3=CC=4C(CC)=C(C)C5=Cc6c(C=C)c(C)c7C=C8C(C)C(CCC(=O)OC\C=C(/C)CCCC(C)CCCC(C)CCCC(C)C)C=9C1=C2N3[Mg](n76)(N5=4)N8=9
OpenEye OEToolkits 2.0.7CCC1=C(C2=Cc3c(c(c4n3[Mg]56[N]2=C1C=C7N5C8=C([C@H](C(=O)C8=C7C)C(=O)OC)C9=[N]6C(=C4)[C@H]([C@@H]9CCC(=O)OC/C=C(\C)/CCC[C@H](C)CCC[C@H](C)CCCC(C)C)C)C)C=C)C
CACTVS 3.385CCC1=C(C)C2=Cc3n4[Mg][N@@]5C(=CC1=N2)C(=C6C(=O)[C@H](C(=O)OC)C(=C56)C7=NC(=Cc4c(C)c3C=C)[C@@H](C)[C@@H]7CCC(=O)OC\C=C(/C)CCC[C@H](C)CCC[C@H](C)CCCC(C)C)C
FormulaC55 H72 Mg N4 O5
NameCHLOROPHYLL A
ChEMBL
DrugBankDB02133
ZINC
PDB chain8wmj Chain A Residue 841 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8wmj Growth phase-dependent reorganization of cryptophyte photosystem I antennae.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		R683 T684 P685
Binding residue
(residue number reindexed from 1)		R682 T683 P684
Annotation score1
Enzymatic activity
Enzyme Commision number 1.97.1.12: photosystem I.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0009055 electron transfer activity
GO:0016168 chlorophyll binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0015979 photosynthesis
Cellular Component
GO:0009507 chloroplast
GO:0009522 photosystem I
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8wmj, PDBe:8wmj, PDBj:8wmj
PDBsum8wmj
PubMed38734819
UniProtA6MVZ6|PSAB_RHDSA Photosystem I P700 chlorophyll a apoprotein A2 (Gene Name=psaB)

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