Structure of PDB 8u7y Chain B Binding Site BS04

Receptor Information
>8u7y Chain B (length=603) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
WLRWVTQQFKTIEISLQEFKAALHSFFAERFFALFRSGTITLQELQEALT
SPMDKLKFLFQVYDIDDPDELRTVLQSCLRESAISLPDEKLDQLTLALFE
SADAGAITFEELRDELQRFVMENLTISAAHWTRAYWHNHRSQLFCLATYA
GLHVLLFGLAASAHRDLGASVMVAKGCGQCLNFDCSFIAVLMLRRCLTWL
RATWLAQVLPLDQNIQFHQLMGYVVVGLSLVHTVAHTVNFVLQAQGSASP
TGVALLLLLLLMFICSSSCIRRSGHFEVFYWTHLSYLLVWLLLIFHGPNF
WKWLLVPGILFFLEKAIGLAVSRMAAVCIMEVNLLPSKVTHLLIKRPPFF
HYRPGDYLYLNIPTIARYEWHPFTISSAPEQKDTIWLHIRSQGQWTNRLY
ESFKACNIKCYIDGPYGTPTRRIFASEHAVLIGAGIGITPFASILQSIMY
RHQKRKHTCPSCQHSWIEGVQDNMKLHKVDFIWINRDQRSFEWFVSLLTK
LEMDQAEEAQYGRFLELHMYMTSALKAIGLQMALDLLANKEKKDSITGLQ
TRTQPGRPDWSKVFQKVEKKGKVQVFFCGSPALAKVLKGHCEKFGFRFFQ
ENF
Ligand information
Ligand IDHEB
InChIInChI=1S/C34H36N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h8,13-16H,2,7,9-12H2,1,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;
InChIKeyNEGHHAJBRZGUAY-RGGAHWMASA-L
SMILES
SoftwareSMILES
CACTVS 3.385CCC1=C(C)C2=NC1=Cc3n4[Fe][N]5C(=C2)C(=C(CCC(O)=O)C5=CC6=NC(=Cc4c(C=C)c3C)C(=C6CCC(O)=O)C)C
CACTVS 3.385CCC1=C(C)C2=NC1=Cc3n4[Fe][N@@]5C(=C2)C(=C(CCC(O)=O)C5=CC6=NC(=Cc4c(C=C)c3C)C(=C6CCC(O)=O)C)C
OpenEye OEToolkits 2.0.7CCC1=C(C2=[N]3C1=Cc4c(c(c5n4[Fe]36[N]7=C(C=C8N6C(=C2)C(=C8CCC(=O)O)C)C(=C(C7=C5)C)CCC(=O)O)C=C)C)C
FormulaC34 H34 Fe N4 O4
NameHEME B/C;
HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX CONTAINING FE)
ChEMBL
DrugBank
ZINC
PDB chain8u7y Chain B Residue 806 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8u7y Structural Basis of Human NOX5 Activation
Resolution4.06 Å
Binding residue
(original residue number in PDB)		K225 G228 L231 N232 H282 T283 H286 G325 V326 H369 G370 P371 N372
Binding residue
(residue number reindexed from 1)		K175 G178 L181 N182 H232 T233 H236 G252 V253 H296 G297 P298 N299
Annotation score1
Enzymatic activity
Enzyme Commision number 1.6.3.-
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
GO:0015252 proton channel activity
GO:0016175 superoxide-generating NAD(P)H oxidase activity
GO:0016491 oxidoreductase activity
GO:0020037 heme binding
GO:0046872 metal ion binding
GO:0050660 flavin adenine dinucleotide binding
GO:0050661 NADP binding
GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
GO:0106292 superoxide-generating NADPH oxidase activity
Biological Process
GO:0001525 angiogenesis
GO:0001819 positive regulation of cytokine production
GO:0001935 endothelial cell proliferation
GO:0006915 apoptotic process
GO:0006952 defense response
GO:0034220 monoatomic ion transmembrane transport
GO:0042554 superoxide anion generation
GO:0043012 regulation of fusion of sperm to egg plasma membrane
GO:0061640 cytoskeleton-dependent cytokinesis
GO:1902600 proton transmembrane transport
Cellular Component
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005886 plasma membrane
GO:0043020 NADPH oxidase complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8u7y, PDBe:8u7y, PDBj:8u7y
PDBsum8u7y
PubMed
UniProtQ96PH1|NOX5_HUMAN NADPH oxidase 5 (Gene Name=NOX5)

[Back to BioLiP]