Structure of PDB 8szu Chain B Binding Site BS04

Receptor Information

>8szu Chain B (length=342) Species: 470 (Acinetobacter baumannii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

KKIGYVWDTLYSWVDAANLSKRIQPITHHMNHPDTKRRFNELVMTSGQID
FLTPIKPYPATDADILRVHDKQLLDNAKNGGIEIAYLSAGGAIELTKKVI
SGELHTGYALVSPPGHHATKKDSMGFCIFNNTSIAAAYAKDILGLKRVAI
VDWDVHHGNGTQDIWWEDSSVLTISIHQNKCFPTNSGFINERGAGNGFGY
NLNIPLPPGSGNGAYIYAFEKVIVPALKKYEPELIIVGSGFDASILDPLS
RMMVSSEGFKKMASLILEVSNEINGGKCLFVQEGGYSPHYLPFCGLAVIE
ALTGMHTLDDPLIDMVGEMGGNELLPHEKKVVDECANLIADI

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

8szu Chain B Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8szu Structure and Function of Kdac1, a Class II Deacetylase from the Multidrug-Resistant Pathogen Acinetobacter baumannii .
Resolution	1.75 Å
Binding residue (original residue number in PDB)	D181 H183 D269
Binding residue (residue number reindexed from 1)	D154 H156 D242
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0004407	histone deacetylase activity
GO:0046872	metal ion binding

	Biological Process
GO:0000122	negative regulation of transcription by RNA polymerase II
GO:0006338	chromatin remodeling

	Cellular Component
GO:0005737	cytoplasm

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:8szu, PDBe:8szu, PDBj:8szu
PDBsum	8szu
PubMed	37624144
UniProt	R8YPJ7

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