Structure of PDB 8db3 Chain B Binding Site BS04

Receptor Information
>8db3 Chain B (length=439) Species: 1063 (Cereibacter sphaeroides) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MGIGKSPTGIQGFDELTLGGLPTGRPSLVCGSAGCGKTLFASTFLINGVR
DHGEPGVFVTFEERPEDIVNNVASLGFELDKLIEEEKIAIEHILEGLFLR
LELAIDTVGAKRVVLDTIESLFSAFSNPAILRAEIRRLFDWLKERGLTTV
ITAERGDGALTRQGLEEYVSDCVILLDHRVENQISTRRLRIVKYRGTAHG
TNEYPFLIDTDGFSVLPVSALGLLHQVHEERIASGVPDLDAMMAGGGFFR
GSSILVSGVAGAGKSSLAAHFAAAACARGERAMYFSFEEAADQAVRNMRS
LGLDLGRWRDAGLLRFMATRPTFYSLEMHLAVILREVMRFEPSVVVLDPI
SAFTESGDRLEVQSMLLRIVDFLKNRGITGIFTHLAGLSSLMDGWVLMLN
REVNGEFNRELYLLKARGMAHSNQVREFLMSDRGISLLP
Ligand information
Ligand IDADP
InChIInChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyXTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
FormulaC10 H15 N5 O10 P2
NameADENOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL14830
DrugBankDB16833
ZINCZINC000012360703
PDB chain8db3 Chain B Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8db3 From primordial clocks to circadian oscillators.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		G275 G277 K278 S279 S280 S314 L315 M454
Binding residue
(residue number reindexed from 1)		G261 G263 K264 S265 S266 S300 L301 M430
Annotation score5
Enzymatic activity
Enzyme Commision number 2.7.11.1: non-specific serine/threonine protein kinase.
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity

View graph for
Molecular Function
External links
PDB RCSB:8db3, PDBe:8db3, PDBj:8db3
PDBsum8db3
PubMed36949197
UniProtB9KWX8

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