Structure of PDB 7svw Chain B Binding Site BS04

Receptor Information

>7svw Chain B (length=446) Species: 1469607 ([Scytonema hofmanni] UTEX 2349)

LEKNVIATQLSEEAQVKLEVIQSLLEPCDRTTYGQKLREAAEKLNVSLRT
VQRLVKNWEQDGLVGLTQTSRADKGKHRIGEFWENFITKTYKEGNKGSKR
MTPKQVALRVEAKARELKDSKPPNYKTVLRVLAPILEKQQKAKSIRSPGW
RGTTLSVKTREGKDLSVDYSNHVWQCDHTRVDVLLVDQHGEILSRPWLTT
VIDTYSRCIMGINLGFDAPSSGVVALALRHAILPKRYGSEYKLHCEWGTY
GKPEHFYTDGGKDFRSNHLSQIGAQLGFVCHLRDRPSEGGVVERPFKTLN
DQLFSTLPGYTGSNVQERPEDAEKDARLTLRELEQLLVRYIVDRYNQSID
ARMGDQTRFERWEAGLPTVPVPIPERDLDICLMKQSRRTVQRGGCLQFQN
LMYRGEYLAGYAGETVNLRFDPRDITTILVYRQENNQEVFLTRAHA

Ligand information

>7svw Chain 5 (length=30)

tgtacagtgacaaattatctgtcgtcggtg

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7svw Mechanistic details of CRISPR-associated transposon recruitment and integration revealed by cryo-EM.
• Resolution: 3.69 Å
• Binding residue (original residue number in PDB): R58 V74 S75 R77 R99 D101 K132 Y153
• Binding residue (residue number reindexed from 1): R30 V46 S47 R49 R71 D73 K104 Y125

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 13:29:00 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7svw', asym_id = 'B', bs = 'BS04', title = 'Mechanistic details of CRISPR-associated transposon recruitment and integration revealed by cryo-EM.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7svw', asym_id='B', bs='BS04', title='Mechanistic details of CRISPR-associated transposon recruitment and integration revealed by cryo-EM.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003676,0015074', uniprot = '', pdbid = '7svw', asym_id = 'B'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003676,0015074', uniprot='', pdbid='7svw', asym_id='B')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>