Structure of PDB 7r0w Chain B Binding Site BS04

Receptor Information
>7r0w Chain B (length=159) Species: 1148 (Synechocystis sp. PCC 6803) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SIIKKPDLSDPDLRAKLAKGMGHNYYGEPAWPNDILYMFPICILGALGLI
AGLAILDPAMIGEPADPFATPLEILPEWYLYPTFQILRILPNKLLGIAGM
AAIPLGLMLVPFIESVNKFQNPFRRPIAMTVFLFGTAAALWLGAGATFPI
DKSLTLGLF
Ligand information
Ligand ID2WA
InChIInChI=1S/C35H70O5/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-35(38)40-33(31-36)32-39-34(37)29-27-25-23-21-19-16-14-12-10-8-6-4-2/h17-18,33-38H,3-16,19-32H2,1-2H3/b18-17+/t33-,34-,35-/m0/s1
InChIKeyYLBOKUFLARRKAJ-FAMWHJLKSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CCCCCCCCCCCCCCC(O)OCC(CO)OC(CCCCCCC=CCCCCCCCC)O
OpenEye OEToolkits 1.7.6CCCCCCCCCCCCCC[C@@H](O)OC[C@H](CO)O[C@@H](CCCCCC/C=C/CCCCCCCC)O
CACTVS 3.385CCCCCCCCCCCCCC[CH](O)OC[CH](CO)O[CH](O)CCCCCCC=CCCCCCCCC
ACDLabs 12.01OC(OC(COC(O)CCCCCCCCCCCCCC)CO)CCCCCC/C=C/CCCCCCCC
CACTVS 3.385CCCCCCCCCCCCCC[C@@H](O)OC[C@H](CO)O[C@H](O)CCCCCC/C=C/CCCCCCCC
FormulaC35 H70 O5
Name(1S,8E)-1-{[(2S)-1-hydroxy-3-{[(1S)-1-hydroxypentadecyl]oxy}propan-2-yl]oxy}heptadec-8-en-1-ol
ChEMBL
DrugBank
ZINCZINC000098208335
PDB chain7r0w Chain B Residue 303 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7r0w Cryo-EM structures of the Synechocystis sp. PCC 6803 cytochrome b6f complex with and without the regulatory PetP subunit.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		A138 L141 T148
Binding residue
(residue number reindexed from 1)		A137 L140 T147
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008121 ubiquinol-cytochrome-c reductase activity
GO:0009055 electron transfer activity
GO:0016491 oxidoreductase activity
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Biological Process
GO:0009767 photosynthetic electron transport chain
GO:0015979 photosynthesis
GO:1902600 proton transmembrane transport
Cellular Component
GO:0009512 cytochrome b6f complex
GO:0009579 thylakoid
GO:0016020 membrane
GO:0031676 plasma membrane-derived thylakoid membrane
GO:0042651 thylakoid membrane
GO:0045275 respiratory chain complex III

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7r0w, PDBe:7r0w, PDBj:7r0w
PDBsum7r0w
PubMed35726684
UniProtP27589|PETD_SYNY3 Cytochrome b6-f complex subunit 4 (Gene Name=petD)

[Back to BioLiP]