Structure of PDB 7d4o Chain B Binding Site BS04

Receptor Information

>7d4o Chain B (length=347) Species: 550 (Enterobacter cloacae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MELQPQFNEFLANIRPTDTQKEDWKSGARTLRERLKNFEPLKEIVVSTFL
QGSIRRSTAIRPLGDKRPDVDIVVVTNLDHTRMSPTDAMDLFIPFLEKYY
PGKWETQGRSFGITLSYVELDLVITAIPESGAEKSHLEQLYKSESVLTVN
SLEEQTDWRLNKSWTPNTGQVEDAPASEWKAHPLVLPDREKNEWGRTHPL
AQIRWTAEKNRLCNGHYINLVRAVKWWRQQNSEDLPKYPKGYPLEHLIGN
ALDNGTTSMAQGLVQLMDTFLSRWAAIYNQKSKPWLSDHGVAEHDVMARL
TAEDFCSFYEGIASAAEIARNALASEEPQESAQLWRQLFGSKFPLPG

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

7d4o Chain B Residue 404 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	7d4o Crystal structure and functional implication of a bacterial cyclic AMP-AMP-GMP synthetase.
Resolution	1.87 Å
Binding residue (original residue number in PDB)	D69 D71 D121
Binding residue (residue number reindexed from 1)	D69 D71 D121
Annotation score	1

Enzymatic activity

Enzyme Commision number

2.7.7.-

Gene Ontology

	Molecular Function
GO:0005524	ATP binding
GO:0005525	GTP binding
GO:0016779	nucleotidyltransferase activity
GO:0046872	metal ion binding

	Biological Process
GO:0009117	nucleotide metabolic process
GO:0051607	defense response to virus

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Molecular Function

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Biological Process

External links

PDB	RCSB:7d4o, PDBe:7d4o, PDBj:7d4o
PDBsum	7d4o
PubMed	33836064
UniProt	P0DSP4\|CDND2_ENTH5 Cyclic AMP-AMP-GMP synthase (Gene Name=cdnD02)

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