Structure of PDB 6qev Chain B Binding Site BS04

Receptor Information

>6qev Chain B (length=1346) Species: 216816 (Bifidobacterium longum)

MVACETLKTKKMEVQIKKNFPSVLQYTMTDGKVMYGQSKDVRTVEINGTN
IELGDDDVTFKKVSDTEATYTLKVKDEAKKIDAVITVQITVKANQLHLNV
TKIKNNLSEGIPEGNGVEENAIQTLSFPNQSLVSVRSSQENAQFTGARMS
SNTQKPGDTNFAVTEDTNVTDSDYTYGFISGAGLSAGLWSNSEHDGTYVA
APVRGGSQNTRVYATTQQTGDATSLGLASAPWYYHRTVTDSKGKKYTVAE
TALPQMAVAIAGDENEDGAVNWQDGAIAYRDIMNNPYKSEEVPELVAWRI
AMNFGSQAQNPFLTTLDNVKKVALNTDGLGQSVLLKGYGNEGHDSGHPDY
GDIGQRLGGADDMNTMMEEGSKYGARFGVHVNASEMYPEAKAFSEDMVRR
NSAGGLSYGWNWLDQGVGIDGIYDLASGSRVSRFADLSKEVGDNMDFIYL
DVWGNLTSSGSEDSWETRKMSKMINDNGWRMTTEWGSGNEYDSTFQHWAA
DLTYGGYTSKGENSEVMRFLRNHQKDSWVGDYPQYGGAANAPLLGGYNMK
DFEGWQGRNDYAAYIKNLYTHDVSTKFIQHFKVTRWVNNPLLTADNGNAA
AVSDPNTNNGNEQITLKDSNGNVVVVSRGSNDTSSAAYRQRTITFNGVKV
ASGVVSAGDGSATGDESYLLPWMWDSFTGKLVKDSEQKLYHWNTKGGTTT
WTLPDSWKNLSSVKVYQLTDQGKTNEQTVAVSGGKVTLTADAETPYVVYK
GEAKQIQVNWSEGMHVVDAGFNGGSNTLTDNWTVSGSGKAEVEGDNNAML
RLTGKVDVSQRLTDLKAGQKYALYVGVDNRSTGDASVTVTSGGKVLATNS
TGKSIAKNYIKAYGHNTNSNTENGSSYFQNMYVFFTAPENGDATVTLSHK
STDGAHTYFDDVRIVENQYSGITYEKDGTLKSLTNGFENNAQGIWPFVVS
GSEGVEDNRIHLSELHAPFTRAGWDVKKMDDVLDGTWSVKVNGLTQKGTL
VYQTIPQNVKFEAGAKYKVSFDYQSGSDDIYAIAVGQGEYSAGSVKLTNL
KKALGETGKAEFELTGGVNGDSWFGIYSTATAPDLQGSTGNAQDFGGYKD
FVLDNLKIERIESQTRTKAEAQDKVKEIRGKYDSKRAELSDAAWQQYQDT
LVKARVLINKNGATAEDFTKAYDILVALDEYMKLKDLDRKLLEAARAGQD
DEVRILMANGADVNAKDEYGATPLHLAAWTGHLEIVEVLLKTGADVNAVD
SVGYTPLHLAAAEGHLEIVEVLLKTGADVNAQDAQGITPLHLAAWYGHLE
IVEVLLKHGADVNAQDCFGKTPFDLAIDNGNEDIAEVLQKAAKLGS

Ligand information

• Ligand ID: MN
• InChI: InChI=1S/Mn/q+2
• InChIKey: WAEMQWOKJMHJLA-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mn+2]
  CACTVS 3.341: [Mn++]
• Formula: Mn
• Name: MANGANESE (II) ION
• DrugBank: DB06757
• PDB chain: 6qev Chain B Residue 1703

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6qev Structural analysis of biological targets by host:guest crystal lattice engineering.
• Resolution: 2.7 Å
• Binding residue (original residue number in PDB): G1108 N1135 A1136 D1248
• Binding residue (residue number reindexed from 1): G770 N797 A798 D910
• Annotation score: 4

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 15:00:37 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6qev', asym_id = 'B', bs = 'BS04', title = 'Structural analysis of biological targets by host:guest crystal lattice engineering.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6qev', asym_id='B', bs='BS04', title='Structural analysis of biological targets by host:guest crystal lattice engineering.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0030246,0033926', uniprot = '', pdbid = '6qev', asym_id = 'B'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0030246,0033926', uniprot='', pdbid='6qev', asym_id='B')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>