Structure of PDB 6pxu Chain B Binding Site BS04

Receptor Information
>6pxu Chain B (length=532) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PGPPRTPRPGRREPVMPRPPVPANALGARGEAVRLQLQGEELRLQEESVR
LHQINIYLSDRISLHRRLPERWNPLCKEKKYDYDNLPRTSVIIAFYNEAW
STLLRTVYSVLETSPDILLEEVILVDDYSDREHLKERLANELSGLPKVRL
IRANKREGLVRARLLGASAARGDVLTFLDCHCECHEGWLEPLLQRIHEEE
SAVVCPVIDVIDWNTFEYLGNSGEPQIGGFDWRLVFTWHTVPERERIRMQ
SPVDVIRSPTMAGGLFAVSKKYFEYLGSYDTGMEVWGGENLEFSFRIWQC
GGVLETHPCSHVGHVFPKQAPYSRNKALANSVRAAEVWMDEFKELYYHRN
PRARLEPFGDVTERKQLRDKLQCKDFKWFLETVYPELHVPEDRPGFFGML
QNKGLTDYCFDYNPPDENQIVGHQVILYLCHGMGQNQFFEYTSQKEIRYN
THQPEGCIAVEAGMDTLIMHLCEETAPENQKFILQEDGSLFHEQSKKCVQ
AARKESSDSFVPLLRDCTNSDHQKWFFKERML
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain6pxu Chain B Residue 615 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6pxu The structure of the colorectal cancer-associated enzyme GalNAc-T12 reveals how nonconserved residues dictate its function.
Resolution2.007 Å
Binding residue
(original residue number in PDB)		Y145 D179
Binding residue
(residue number reindexed from 1)		Y96 D130
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.1.41: polypeptide N-acetylgalactosaminyltransferase.
Gene Ontology
Molecular Function
GO:0004653 polypeptide N-acetylgalactosaminyltransferase activity
GO:0005515 protein binding
GO:0016757 glycosyltransferase activity
GO:0030246 carbohydrate binding
GO:0046872 metal ion binding
Biological Process
GO:0006486 protein glycosylation
GO:0006493 protein O-linked glycosylation
GO:0016266 O-glycan processing
Cellular Component
GO:0000139 Golgi membrane
GO:0005794 Golgi apparatus
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6pxu, PDBe:6pxu, PDBj:6pxu
PDBsum6pxu
PubMed31548401
UniProtQ8IXK2|GLT12_HUMAN Polypeptide N-acetylgalactosaminyltransferase 12 (Gene Name=GALNT12)

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