Structure of PDB 6d0n Chain B Binding Site BS04

Receptor Information
>6d0n Chain B (length=396) Species: 565654 (Enterococcus casseliflavus EC10) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ETTYFELTALGLLSLVIGVLAGAVDTFFGKILLFLSAFRESHFLPLILFL
PIIGICFTYLFQKYGDRSPQGMNLVFLVGQEEEKDIPLRLIPFVMVGTWL
THLFGGSAGREGVAVQLGATIANRLGNWVRLEKYASTLIMIGMAAGFAGL
FETPIAATFFALEVLVIGKFSHHALLPALLAAFTASTTSQWLGLEKFSLM
LPQSVDLTIPVFLKLLVIGLIFGMVGGSFAGCLETMKRIMKRRFPNPLWR
IGIGALALVLLFVLLYQGRYSGLGTNLISASFTNQPIYSYDWLLKLVLTV
LTISSGFLGGEGTPLFAIGSSLGVVLAPLFGLPIELVAALGYASVFGSAT
STLFAPIFIGGEVFGFQNLPFFVIVCSVAYFISKPYSIYPLQKTSA
Ligand information
Ligand IDDMU
InChIInChI=1S/C22H42O11/c1-2-3-4-5-6-7-8-9-10-30-21-19(29)17(27)20(14(12-24)32-21)33-22-18(28)16(26)15(25)13(11-23)31-22/h13-29H,2-12H2,1H3/t13-,14-,15-,16+,17-,18-,19-,20-,21-,22-/m1/s1
InChIKeyWOQQAWHSKSSAGF-WXFJLFHKSA-N
SMILES
SoftwareSMILES
CACTVS 3.370CCCCCCCCCCO[CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O
ACDLabs 12.01O(CCCCCCCCCC)C2OC(C(OC1OC(CO)C(O)C(O)C1O)C(O)C2O)CO
OpenEye OEToolkits 1.7.6CCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O
OpenEye OEToolkits 1.7.6CCCCCCCCCCOC1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)O)O)O)O
CACTVS 3.370CCCCCCCCCCO[C@@H]1O[C@H](CO)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O
FormulaC22 H42 O11
NameDECYL-BETA-D-MALTOPYRANOSIDE;
DECYLMALTOSIDE
ChEMBL
DrugBank
ZINCZINC000085482724
PDB chain6d0n Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6d0n A CLC-type F-/H+antiporter in ion-swapped conformations.
Resolution3.12 Å
Binding residue
(original residue number in PDB)		L17 E88 K176 H180
Binding residue
(residue number reindexed from 1)		L10 E81 K169 H173
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 17:01:00 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6d0n', asym_id = 'B', bs = 'BS04', title = 'A CLC-type F-/H+antiporter in ion-swapped conformations.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6d0n', asym_id='B', bs='BS04', title='A CLC-type F-/H+antiporter in ion-swapped conformations.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0005247,0006821,0016020,0055085', uniprot = '', pdbid = '6d0n', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005247,0006821,0016020,0055085', uniprot='', pdbid='6d0n', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>