Structure of PDB 6az3 Chain B Binding Site BS04

Receptor Information
>6az3 Chain B (length=402) Species: 5661 (Leishmania donovani) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SHCKFEHPRHGHLGFLPRKRSRQIRGRARAFPKDDATQKPHLTSFMVFKA
GMTHIVRDVDRPGSKVNKKEVVEPVTILEAPPMVIVGIVGYRQTPVGLKT
IGTVWAHHTSVEFRRRYYKNWKQSAQLAFSRQKQFANTKEGKVAEARTLN
AFAKKASVIRVIAHTQLRKLRNHRVGVKKAHVQEIQINGGNVAAKIALAK
SLLEKEVRVDSVFQQSEACDVCSVTKGHGTEGVVKRWGVACLPRKTHRGL
RKVACIGAWHPARVMYTVARAGQHGYHHRTQLNKKIYQIGRSVAVEPNQA
TTTYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVSGPRRRVMTLRRPMAP
QTSRHLKEKIVLKFIDTSSKIGHGRFQTKKEKNQWFGPLKKDRIRREERL
RK
Ligand information
>6az3 Chain 5 (length=97) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uacgucccucuccaaacgagagaacaugcaugggcuggcaugagcggggg
gcucgucccgaggcgcugaaccuugaggccucaugcucagggacaca
...<<<<<<<<<.......>>>>....<<<<<<<<.<<.....<<<...<
<......>>....>>>....>>.....>>>.>>>>>...>>>>>...
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6az3 Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		R21 I25 R116 R117 K120 N121 K123 A126 H174 R175 V176 G177 V178 K179 K180 K227 G228 G230 T231 Q274 M315 G320 G322 R325 R340 R341 S370 I372 K380 K383 W386 F387 L390 K391 K392
Binding residue
(residue number reindexed from 1)		R20 I24 R115 R116 K119 N120 K122 A125 H173 R174 V175 G176 V177 K178 K179 K226 G227 G229 T230 Q273 M314 G319 G321 R324 R339 R340 S369 I371 K379 K382 W385 F386 L389 K390 K391
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Dec 4 05:54:39 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6az3', asym_id = 'B', bs = 'BS04', title = 'Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6az3', asym_id='B', bs='BS04', title='Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6az3', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6az3', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>