Structure of PDB 5l2l Chain B Binding Site BS04

Receptor Information

>5l2l Chain B (length=74) Species: 1294386 (Saccharomyces cerevisiae YJM1574) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

GSEKSLEQCKFGTHCTNKRCKYRHARSHIMCREGANCTRIDCLFGHPINE
DCRFGVNCKNIYCLFRHPPGRVLP

Ligand information

InChI=1S/Zn/q+2

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Zn

Name

ZINC ION

PDB chain

5l2l Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	5l2l Structural basis for the dimerization of Nab2 generated by RNA binding provides insight into its contribution to both poly(A) tail length determination and transcript compaction in Saccharomyces cerevisiae.
Resolution	1.55 Å
Binding residue (original residue number in PDB)	C415 C421 C426 H430
Binding residue (residue number reindexed from 1)	C9 C15 C20 H24
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:5l2l, PDBe:5l2l, PDBj:5l2l
PDBsum	5l2l
PubMed	28180315
UniProt	P32505\|NAB2_YEAST Nuclear polyadenylated RNA-binding protein NAB2 (Gene Name=NAB2)

[Back to BioLiP]