Structure of PDB 5jse Chain B Binding Site BS04

Receptor Information
>5jse Chain B (length=548) Species: 38018 (Bacteriophage sp.) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QTQYYLKYFNPEIVYPKNARIMLDNGDIVRSTVVNNTSNPNVDMTGWVKV
SSVSQIFDETYNITQSVINGNLITVDNFGAKGDGVTDDSAAFQAYCDSAL
TGQNLYLGAKGRYILKNQVDLKGKGLVGNGCGKVSEFYYNLGCIDVDGSS
PDLQGKTAFINCGPTIQNLTARCSNGAGKQVSFIEIDGYLANIDHITLIN
FYNQIVVKQALVGFNFTNAWLYYSQNAGIYCEDPLNRVSTTGTFHNIYFQ
LGDGHAMIFDRDVHGCDFDNIIFESMNGGIKARTVAHCGFGKFWCENLKT
ATSKDWLEVTGANSCYGNSFTGYVKLLGGWTSKTSPTLDSLPTNNYGGVS
VSAEGISIVNAGNKAKMLMLPSGFKTGNATIDETHISSSTVTPLVKRRVI
GADSSGAQYLASDTYTKLSRKWGTYNHGSNNAGAFYAPMMLTYDQSFSTP
QNNNGWKIVKESTGVYRVERVSGNTSVITNGHIVVGSPLMGSRLGTGTGA
THGIQMIETYAGSWTSYTEAAGFKVFWRDSSNALVDPHRFTVAFTATS
Ligand information
Ligand ID6PZ
InChIInChI=1S/C13H22N2O8/c1-5(16)9(14-6(2)17)11-10(15-7(3)18)8(19)4-13(22,23-11)12(20)21/h5,8-11,16,19,22H,4H2,1-3H3,(H,14,17)(H,15,18)(H,20,21)/t5-,8-,9-,10-,11-,13-/m0/s1
InChIKeyZJOSXOOPEBJBMC-LJRWBPDUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6C[C@@H]([C@@H]([C@H]1[C@H]([C@H](C[C@](O1)(C(=O)O)O)O)NC(=O)C)NC(=O)C)O
CACTVS 3.385C[C@H](O)[C@H](NC(C)=O)[C@@H]1O[C@@](O)(C[C@H](O)[C@@H]1NC(C)=O)C(O)=O
OpenEye OEToolkits 2.0.6CC(C(C1C(C(CC(O1)(C(=O)O)O)O)NC(=O)C)NC(=O)C)O
CACTVS 3.385C[CH](O)[CH](NC(C)=O)[CH]1O[C](O)(C[CH](O)[CH]1NC(C)=O)C(O)=O
FormulaC13 H22 N2 O8
Name5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-non-2-ulopyranosonic acid;
(2~{S},4~{S},5~{S},6~{S})-5-acetamido-6-[(1~{S},2~{S})-1-acetamido-2-oxidanyl-propyl]-2,4-bis(oxidanyl)oxane-2-carboxyl ic acid;
Pseudaminic acid;
5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-non-2-ulosonic acid;
5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-L-manno-non-2-ulosonic acid;
5,7-bisacetamido-3,5,7,9-tetradeoxy-L-glycero-manno-non-2-ulosonic acid
ChEMBL
DrugBank
ZINCZINC000087528526
PDB chain5jse Chain E Residue 7 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5jse Structural basis for fragmenting the exopolysaccharide of Acinetobacter baumannii by bacteriophage Phi AB6 tailspike protein
Resolution1.89 Å
Binding residue
(original residue number in PDB)
H304 N377 A378
Binding residue
(residue number reindexed from 1)
H287 N360 A361
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0046718 symbiont entry into host cell
GO:0098994 symbiont entry into host cell via disruption of host cell envelope
GO:0098996 symbiont entry into host cell via disruption of host cell glycocalyx
Cellular Component
GO:0098015 virus tail

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:5jse, PDBe:5jse, PDBj:5jse
PDBsum5jse
PubMed28209973
UniProtA0A159BDB5

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