Structure of PDB 5d1o Chain B Binding Site BS04
Receptor Information
>5d1o Chain B (length=375) Species:
187420
(Methanothermobacter thermautotrophicus str. Delta H) [
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DIPFDLIQERTGVPSSRLKVAFARGSLRLLESAGMQALLFKKPLGDLEAG
TVIYLGDETEVIRGFPKIRRTLLLSPTIQEHFRDRVAVEEKMNGYNVRIA
CLSSGETVALTRGGHVCPFTTRKAQELLDLSEFFREHPDLVICGEMIGRD
NPYVSQDYPEVGPLGFRVFDLREKNTNRPLPVEERRALLDSYGLPNVRLF
GVYPIEEAASEVADIIRALGMAGREGVVMKDPSMEVPPLKYTSSQAHARE
LAYAFSYPFDFGRPFFFSRVIREGFQAYELDESDDETRERARRLGEAIIY
PMLERIKSISAGEAAYEDTVIDVEDREAAEEFIRHLVRLGVSATLADYRD
GRATIRRFYQSTTDRINNYLKGGLY
Ligand information
Ligand ID
MG
InChI
InChI=1S/Mg/q+2
InChIKey
JLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mg+2]
CACTVS 3.341
[Mg++]
Formula
Mg
Name
MAGNESIUM ION
ChEMBL
DrugBank
DB01378
ZINC
PDB chain
5d1o Chain B Residue 504 [
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Receptor-Ligand Complex Structure
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PDB
5d1o
Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis.
Resolution
2.648 Å
Binding residue
(original residue number in PDB)
X97 E151
Binding residue
(residue number reindexed from 1)
X91 E145
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0005524
ATP binding
GO:0046872
metal ion binding
View graph for
Molecular Function
External links
PDB
RCSB:5d1o
,
PDBe:5d1o
,
PDBj:5d1o
PDBsum
5d1o
PubMed
26896806
UniProt
O27289
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